PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_004510428.1
Organism
Cicer arietinum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Cicereae; Cicer
Family NF-YA
Protein Properties Length: 313aa    MW: 34318.2 Da    PI: 8.5912
Description NF-YA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_004510428.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1CBFB_NFYA104.68.7e-33162218158
       CBFB_NFYA   1 deplYVNaKQyqrIlkRRqkRakleeekkldeksrkpylheSRhkhAlrRpRgsgGrF 58 
                     +ep+YVNaKQy++I++RRq Rakle+++kl +k+rkpylheSRh hAl+R+RgsgGrF
  XP_004510428.1 162 EEPIYVNAKQYHAIMRRRQYRAKLEAQNKL-IKNRKPYLHESRHLHALKRARGSGGRF 218
                     69****************************.**************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005211.7E-37160221IPR001289Nuclear transcription factor Y subunit A
PROSITE profilePS5115237.735161221IPR001289Nuclear transcription factor Y subunit A
PfamPF020452.5E-27163218IPR001289Nuclear transcription factor Y subunit A
PRINTSPR006168.7E-24164186IPR001289Nuclear transcription factor Y subunit A
PROSITE patternPS006860166186IPR018362CCAAT-binding factor, conserved site
PRINTSPR006168.7E-24195218IPR001289Nuclear transcription factor Y subunit A
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0016602Cellular ComponentCCAAT-binding factor complex
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 313 aa     Download sequence    Send to blast
MHIFWTSSES DVQQSSMSEN LTLKMSVLPQ QCHKTKPLGF QFQDQDSSST QSTGQSYLEV  60
GSGQSGPISV QYTNSSACST LSKTGGKSVQ GIIRSTAGSQ DFSFPPSQLD HNQSLAHVAF  120
PHAETCFSGL LAAPYGPQNN VHHAQLVGMA PVRIPLPLDL CEEPIYVNAK QYHAIMRRRQ  180
YRAKLEAQNK LIKNRKPYLH ESRHLHALKR ARGSGGRFLN TKKLQDHGLN VSSSTQLNLS  240
ENVAGSKVHQ VENFRDGAST TACSDVTSTS NSDDMFQQHE SDFRSCGYPS HMQGFSADVG  300
GGGRNQHHLS VLM
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4awl_A4e-21162228273NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT ALPHA
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_004510428.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004510428.10.0nuclear transcription factor Y subunit A-3 isoform X1
TrEMBLA0A1S2YV670.0A0A1S2YV67_CICAR; nuclear transcription factor Y subunit A-3 isoform X1
STRINGXP_004510428.10.0(Cicer arietinum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF101202541
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72830.11e-59nuclear factor Y, subunit A3