PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_004510332.2

Organism

Cicer arietinum

Taxonomic ID

3827

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Cicereae; Cicer

Family

bHLH

Protein Properties

Length: 478aa MW: 53513.5 Da PI: 7.0797

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_004510332.2	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	22	3e-07	391	431	9	54
HHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 9 ErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 r RR+ri +++ L++++P K++ a++L +A +Y+k L XP_004510332.2 391 ARHRRERISEKIRVLQKIVPGG-----SKMDTASMLDEAANYLKFL 431 599***************95.....5**************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	14.17	382	431	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	2.2E-11	387	440	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	3.79E-13	388	441	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	4.84E-9	388	436	No hit	No description
SMART	SM00353	3.9E-12	388	437	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	1.4E-4	392	431	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 478 aa Download sequence Send to blast
MYLLFFLTIQ RFITSNTHGI CITSQSSMAA QGNIYKDQSF ISSQKLQSSM EGLNWNGSEI 60 LESTPILWST HHQEQNMEGD YSSISKSHIH QIQEMDQKVQ TSHTVMMPNT NFSQHAAAAA 120 LTTMTVKSGE AAVSSWKKEP LILQSFQSSS VNKPYNSSTI TTTSTNYMPD FNMAHQQQKQ 180 LIKSGCSFDC LISASTNSNT DTTSIEDDDG ISNIFSDCRR RNLWNFSYAT TASNSSAETD 240 HSNVSNGTNY KNKDMQCNKL NELDETMSQT SSDQLQSKAS DHHFFSTVQN SVSVENGFGI 300 FSDKPPKCKK PRWEKGPFSS NINFQQPKSS TTCCSSSSNE ETDPEAVAAM KEMMYRAAAF 360 RPVNFGMEND VIEKPKRKNV KISNDPQTVA ARHRRERISE KIRVLQKIVP GGSKMDTASM 420 LDEAANYLKF LRSQVKALES LGNKVNAMDC PSTSIAFSFN PSFHMQIHPS DHNNHDYY

Sequence ? help Back to Top

Protein Sequence Length: 478 aa Download sequence Send to blast

MYLLFFLTIQ RFITSNTHGI CITSQSSMAA QGNIYKDQSF ISSQKLQSSM EGLNWNGSEI  60
LESTPILWST HHQEQNMEGD YSSISKSHIH QIQEMDQKVQ TSHTVMMPNT NFSQHAAAAA  120
LTTMTVKSGE AAVSSWKKEP LILQSFQSSS VNKPYNSSTI TTTSTNYMPD FNMAHQQQKQ  180
LIKSGCSFDC LISASTNSNT DTTSIEDDDG ISNIFSDCRR RNLWNFSYAT TASNSSAETD  240
HSNVSNGTNY KNKDMQCNKL NELDETMSQT SSDQLQSKAS DHHFFSTVQN SVSVENGFGI  300
FSDKPPKCKK PRWEKGPFSS NINFQQPKSS TTCCSSSSNE ETDPEAVAAM KEMMYRAAAF  360
RPVNFGMEND VIEKPKRKNV KISNDPQTVA ARHRRERISE KIRVLQKIVP GGSKMDTASM  420
LDEAANYLKF LRSQVKALES LGNKVNAMDC PSTSIAFSFN PSFHMQIHPS DHNNHDYY

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_004510332.2

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004510332.2	0.0	transcription factor bHLH87-like isoform X1
Swissprot	Q8S3D2	3e-71	BH087_ARATH; Transcription factor bHLH87
TrEMBL	A0A1S2YUZ8	0.0	A0A1S2YUZ8_CICAR; transcription factor bHLH87-like isoform X1
STRING	XP_004510332.1	0.0	(Cicer arietinum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF4530	32	57

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G21330.1	9e-62	bHLH family protein

Publications ? help Back to Top
Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature. Differentiation, 2010. 80(1): p. 1-8 [PMID:20219281]