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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_004510292.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Cicereae; Cicer
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Family | ERF | ||||||||
Protein Properties | Length: 220aa MW: 24047.8 Da PI: 4.9423 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 55.9 | 1e-17 | 50 | 99 | 2 | 55 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 y+GVr + +g+Wv+eIr+p++ + r++lg+f t+e+Aa+a++ a++ ++g XP_004510292.1 50 TYHGVRKRN-WGKWVSEIREPRK---KSRIWLGTFSTPEMAARAHDVAALTIKG 99 69****887.**********843...6**********************99887 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00380 | 8.5E-35 | 50 | 113 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 22.813 | 50 | 107 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 3.6E-31 | 50 | 108 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 4.45E-21 | 50 | 107 | IPR016177 | DNA-binding domain |
Pfam | PF00847 | 6.3E-12 | 50 | 99 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 3.07E-31 | 51 | 108 | No hit | No description |
PRINTS | PR00367 | 7.8E-10 | 51 | 62 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 7.8E-10 | 73 | 89 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 220 aa Download sequence Send to blast |
MTQTTSSETT ATTTTSCCNS STSSTSSHST QNQSPTKKPK RPKLDNKHPT YHGVRKRNWG 60 KWVSEIREPR KKSRIWLGTF STPEMAARAH DVAALTIKGK TAILNFPNIA EMLPRPATSA 120 PRDIQAAATA AASMVNLDPP AVHVTSTPSC SDSEEELGQI VELPRIEEGE DDSVDSAAEF 180 VLLDSVDTDG NWLCPATPIG FEGIEFYATY SDEFLLPFWD |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5wx9_A | 5e-19 | 48 | 112 | 12 | 77 | Ethylene-responsive transcription factor ERF096 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_004510292.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004510292.1 | 1e-163 | ethylene-responsive transcription factor ERF039-like | ||||
Swissprot | Q9LYD3 | 9e-53 | DREB3_ARATH; Dehydration-responsive element-binding protein 3 | ||||
TrEMBL | A0A1S2YUV8 | 1e-162 | A0A1S2YUV8_CICAR; ethylene-responsive transcription factor ERF039-like | ||||
STRING | XP_004510292.1 | 1e-163 | (Cicer arietinum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF192 | 34 | 263 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G11590.1 | 6e-52 | ERF family protein |
Publications ? help Back to Top | |||
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