PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_004510231.1

Organism

Cicer arietinum

Taxonomic ID

3827

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Cicereae; Cicer

Family

bHLH

Protein Properties

Length: 510aa MW: 56735.1 Da PI: 6.2059

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_004510231.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	28.2	3.3e-09	319	366	4	55
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +h+ +Er RR++i +++ L++l+P + +k Ka +L + ++Y++sLq XP_004510231.1 319 SHSLAERVRREKISERMKLLQDLVPGC----NKVTGKALMLDEIINYVQSLQ 366 8***********************9....677***************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
CDD	cd00083	9.71E-10	313	370	No hit	No description
SuperFamily	SSF47459	6.41E-17	313	384	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profile	PS50888	15.663	315	365	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	9.4E-17	315	383	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	2.5E-6	319	366	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	1.6E-10	321	371	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 510 aa Download sequence Send to blast
MENQFFLNAG FEPSMPTWQS LSSAMEIQPT TLLNCSSDQN QDCFFNPNWE KSTDQQNHHF 60 DSSALSSIVS SPISSSPPNE NFMMRELIGK LGTFRNSCDE ISQHFVKENM QNMNSSVDLG 120 FVERAAKFSC FGSKSFNERS NNQFVMKNNN VEFVQRSVKV MENGKILPRV SSSPSLKTLV 180 SQINNIENKN ENGRMEVANS QEESTISEQN TPNGEMGVKV SLDIMNSRKR KASSSKGKAS 240 NSSSPKKGVE GSGEESNAKK SKSNEGERNE NGGMNMEEDS KEGTTNAGEE KQNKSNSKPI 300 EPLKDYIHVR ARRGQATDSH SLAERVRREK ISERMKLLQD LVPGCNKVTG KALMLDEIIN 360 YVQSLQRQVE FLSMKLSSVN TRMDLSIESL VSKDVFQSNN SLQNSIFQLD SPAPSFYGQN 420 QAIHNNIPNT TVTHCSVDTL DPSLSQNVGM HLPLLNGFNE AASQYPLTFC EEDLHTIVQM 480 GFGQTSNRNT PIHSPSFNGS NQASQMKIEL

Sequence ? help Back to Top

Protein Sequence Length: 510 aa Download sequence Send to blast

MENQFFLNAG FEPSMPTWQS LSSAMEIQPT TLLNCSSDQN QDCFFNPNWE KSTDQQNHHF  60
DSSALSSIVS SPISSSPPNE NFMMRELIGK LGTFRNSCDE ISQHFVKENM QNMNSSVDLG  120
FVERAAKFSC FGSKSFNERS NNQFVMKNNN VEFVQRSVKV MENGKILPRV SSSPSLKTLV  180
SQINNIENKN ENGRMEVANS QEESTISEQN TPNGEMGVKV SLDIMNSRKR KASSSKGKAS  240
NSSSPKKGVE GSGEESNAKK SKSNEGERNE NGGMNMEEDS KEGTTNAGEE KQNKSNSKPI  300
EPLKDYIHVR ARRGQATDSH SLAERVRREK ISERMKLLQD LVPGCNKVTG KALMLDEIIN  360
YVQSLQRQVE FLSMKLSSVN TRMDLSIESL VSKDVFQSNN SLQNSIFQLD SPAPSFYGQN  420
QAIHNNIPNT TVTHCSVDTL DPSLSQNVGM HLPLLNGFNE AASQYPLTFC EEDLHTIVQM  480
GFGQTSNRNT PIHSPSFNGS NQASQMKIEL

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_004510231.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004510231.1	0.0	transcription factor bHLH62-like
TrEMBL	A0A1S2YUQ4	0.0	A0A1S2YUQ4_CICAR; transcription factor bHLH62-like
STRING	XP_004510231.1	0.0	(Cicer arietinum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF2530	34	80

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G07340.1	2e-94	bHLH family protein