PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Protein Features |

Gene Ontology |

Cis-element |

Regulation |

Basic Information? help Back to Top

TF ID

XP_004510020.1

Organism

Cicer arietinum

Taxonomic ID

3827

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Cicereae; Cicer

Family

HD-ZIP

Protein Properties

Length: 630aa MW: 71862.3 Da PI: 7.2319

Description

HD-ZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_004510020.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	28.8	2.1e-09	30	72	7	49
--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHH CS Homeobox 7 ftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFq 49 +t++q + L++lF++ ++p + + + Ak+lg++ +qVk WFq XP_004510020.1 30 LTSHQEQKLQALFKSFPHPEEFHYHKFAKELGIKPEQVKQWFQ 72 699***************************************9 PP
2	START	95.2	1.3e-30	157	373	7	205
HHHHHHHHHHC-TT-EEEE......EXCCTTEEEEEEESSS.......SCEEEEEEEECCSCHHHHHHHHHCCCGG...CT-TT-SEEEEEEEEC CS START 7 aqelvkkalaeepgWvkss......esengdevlqkfeeskv......dsgealrasgvvdmvlallveellddke...qWdetlakaetlevis 86 ++el +++ + p+W k +++ + ++ ++ v ++ e ++++ +v +lv ++ld+ + + + ++ a t+ v++ XP_004510020.1 157 MNELCCLISTDRPLWLKPLneahgvVL--NPDMYVNLNPEIVqllasgKREESSKEELIVRSSGKQLVDSILDSDKrieLFPTIVTNAITVTVLD 249 566666666666666666644443211..2222222223333446666778889999999999999****9998899************ PP TT......EEEEEEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--.-TTSEE-EESSEEEEEEEECTCEEEEEEEE-EE--S CS START 87 sg......galqlmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppesssvvRaellpSgiliepksnghskvtwvehvdlkg 174 +g galqlm+ e lsp+vp R f f+Ry+++ +wvivdvS+d +++ ++++ a++lpSg++i++++ng+skv+w+ehv +k+ XP_004510020.1 250 TGapetrsGALQLMFEEVHILSPIVPsRIFFFLRYCKKVANASWVIVDVSLDFFYDRQ-TPNS--AHKLPSGCMITELPNGKSKVVWIEHVIVKD 341 *************************************************99998.6777..67**********************98 PP S.XXHHHHHHHHHHHHHHHHHHHHHHTXXXXX CS START 175 r.lphwllrslvksglaegaktwvatlqrqce 205 r +p l++ l++++ ++gak+w+ lqr e XP_004510020.1 342 RrQPIKLYENLIRRCNPFGAKRWLHELQRMYE 373 5388*********************99765 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	3.1E-11	8	72	IPR009057	Homeodomain-like
SuperFamily	SSF46689	1.28E-7	16	72	IPR009057	Homeodomain-like
PROSITE profile	PS50071	10.187	21	74	IPR001356	Homeobox domain
CDD	cd00086	5.32E-6	30	72	No hit	No description
Pfam	PF00046	6.1E-7	30	72	IPR001356	Homeobox domain
PROSITE profile	PS50848	30.068	142	377	IPR002913	START domain
SuperFamily	SSF55961	6.59E-20	144	374	No hit	No description
SMART	SM00234	1.3E-8	151	374	IPR002913	START domain
Pfam	PF01852	9.4E-25	204	373	IPR002913	START domain
SuperFamily	SSF55961	4.26E-9	397	595	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding
GO:0008289	Molecular Function	lipid binding

Sequence ? help Back to Top
Protein Sequence Length: 630 aa Download sequence Send to blast
MDASTGGSSG SGDKKNNNQN SKKEVPFYQL TSHQEQKLQA LFKSFPHPEE FHYHKFAKEL 60 GIKPEQVKQW FQIRTELTKI CPPKSQTDHA PTASNKRKLE ETRVVNKESD IKKHEEPGHS 120 SDKNSEENDQ NPNPTGGNGE SQESQKARML TVATVAMNEL CCLISTDRPL WLKPLNEAHG 180 VVLNPDMYVN LNPEIVQLLA SGKREESSKE ELIVRSSGKQ LVDSILDSDK RIELFPTIVT 240 NAITVTVLDT GAPETRSGAL QLMFEEVHIL SPIVPSRIFF FLRYCKKVAN ASWVIVDVSL 300 DFFYDRQTPN SAHKLPSGCM ITELPNGKSK VVWIEHVIVK DRRQPIKLYE NLIRRCNPFG 360 AKRWLHELQR MYEKNHFSSL EYIPRHANDK EIVSKETRKS VMNLSNRMVH NFCRDLNTCG 420 SGHIPMQLFG NISNSDEIQF NHRKFKDGIL FTATGSVRLH VAPETVFYFL SDETRRHEWD 480 IVVEDSRMHE IAHISSSQNF SYNRVSIHET YNFDNERMIH IVQESCMDPV GAYVVFASVD 540 TRKMYRILNG ENSSTIPLFP SGFMISRDGQ FDHFDTPGSH HTQKGTLLTF SYQVLVSDQT 600 SGAQIMHIIT SVFAHTIHKI KVALNCTDDD

Sequence ? help Back to Top

Protein Sequence Length: 630 aa Download sequence Send to blast

MDASTGGSSG SGDKKNNNQN SKKEVPFYQL TSHQEQKLQA LFKSFPHPEE FHYHKFAKEL  60
GIKPEQVKQW FQIRTELTKI CPPKSQTDHA PTASNKRKLE ETRVVNKESD IKKHEEPGHS  120
SDKNSEENDQ NPNPTGGNGE SQESQKARML TVATVAMNEL CCLISTDRPL WLKPLNEAHG  180
VVLNPDMYVN LNPEIVQLLA SGKREESSKE ELIVRSSGKQ LVDSILDSDK RIELFPTIVT  240
NAITVTVLDT GAPETRSGAL QLMFEEVHIL SPIVPSRIFF FLRYCKKVAN ASWVIVDVSL  300
DFFYDRQTPN SAHKLPSGCM ITELPNGKSK VVWIEHVIVK DRRQPIKLYE NLIRRCNPFG  360
AKRWLHELQR MYEKNHFSSL EYIPRHANDK EIVSKETRKS VMNLSNRMVH NFCRDLNTCG  420
SGHIPMQLFG NISNSDEIQF NHRKFKDGIL FTATGSVRLH VAPETVFYFL SDETRRHEWD  480
IVVEDSRMHE IAHISSSQNF SYNRVSIHET YNFDNERMIH IVQESCMDPV GAYVVFASVD  540
TRKMYRILNG ENSSTIPLFP SGFMISRDGQ FDHFDTPGSH HTQKGTLLTF SYQVLVSDQT  600
SGAQIMHIIT SVFAHTIHKI KVALNCTDDD

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_004510020.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004510020.1	0.0	homeobox-leucine zipper protein HDG12-like
TrEMBL	A0A1S2YU90	0.0	A0A1S2YU90_CICAR; homeobox-leucine zipper protein HDG12-like
STRING	XP_004510020.1	0.0	(Cicer arietinum)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G05230.3	3e-84	homeodomain GLABROUS 2