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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_004509968.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Cicereae; Cicer
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Family | ZF-HD | ||||||||
Protein Properties | Length: 349aa MW: 37881 Da PI: 8.9223 | ||||||||
Description | ZF-HD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | ZF-HD_dimer | 106 | 2.3e-33 | 52 | 109 | 3 | 59 |
ZF-HD_dimer 3 kvrYkeClkNhAaslGghavDGCgEfmpsegee.gtaaalkCaACgCHRnFHRrevee 59 v YkeClkNhAa+lGgha+DGCgEfmps++ + +++++lkCaACgCHRnFHRr+++e XP_004509968.1 52 VVSYKECLKNHAAALGGHALDGCGEFMPSSSVNlNDPRSLKCAACGCHRNFHRRDPQE 109 689**************************99999********************9876 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
ProDom | PD125774 | 6.0E-15 | 52 | 106 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
Pfam | PF04770 | 8.8E-28 | 53 | 107 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
TIGRFAMs | TIGR01566 | 1.4E-31 | 55 | 106 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
PROSITE profile | PS51523 | 27.084 | 55 | 106 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
SuperFamily | SSF46689 | 1.08E-17 | 224 | 293 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 2.2E-28 | 229 | 294 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01565 | 4.2E-25 | 235 | 292 | IPR006455 | Homeodomain, ZF-HD class |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 349 aa Download sequence Send to blast |
MDMTIDADAK TPPSTQPNNT TTLKSSPFTN GTHKRHQLTI TPPPHQPPPS MVVSYKECLK 60 NHAAALGGHA LDGCGEFMPS SSVNLNDPRS LKCAACGCHR NFHRRDPQEH IITTTAATTN 120 NNFVSCIYTT PSTTVPPPQP PLPQSHRGPI SQSTSPSQST SPSQSPSPIS SPSSPPPLSH 180 LPPSSYHTSA PHMLLALGNA YSTTPPTTSN HDQHHQRHIN FSSSVVKIEN NPSGKKRYRT 240 KFSKEQKEKM QKFSEKLGWR MQKGDDGLVQ KFCNDVGVSR GVFKVWMHNN KNKRSESDVG 300 IGIGIGDQNV DDKNNDGGGS GFRSDINNEI HTSEDGCVNN VHVSSVNGN |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1wh7_A | 2e-21 | 236 | 297 | 18 | 79 | ZF-HD homeobox family protein |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_004509968.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004509968.1 | 0.0 | zinc-finger homeodomain protein 11-like | ||||
TrEMBL | A0A1S2YU42 | 0.0 | A0A1S2YU42_CICAR; zinc-finger homeodomain protein 11-like | ||||
STRING | XP_004509968.1 | 0.0 | (Cicer arietinum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1979 | 31 | 88 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G28920.1 | 7e-26 | homeobox protein 34 |