PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_004509801.2 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Cicereae; Cicer
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Family | LBD | ||||||||
Protein Properties | Length: 259aa MW: 29387.6 Da PI: 5.3354 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 62.7 | 9.1e-20 | 11 | 107 | 2 | 98 |
DUF260 2 CaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelal 96 C +C+ +rr+ +++C + +yfp +++++f + +FG +n+++l++++++++r++a +s++ e++a+ P +G +g l+l +q++++ el+ XP_004509801.2 11 CLVCRQQRRRHNQECEMGQYFPIDRHEDFDRACYIFGLNNIIRLMQSVEKHQRHAAGNSILLEGRAWRLYPSSGLLGYQLELGSQVSSSLIELQN 105 99************************************************************************************999998887 PP DUF260 97 lk 98 ++ XP_004509801.2 106 AN 107 65 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50891 | 16.086 | 9 | 110 | IPR004883 | Lateral organ boundaries, LOB |
Pfam | PF03195 | 8.6E-19 | 11 | 106 | IPR004883 | Lateral organ boundaries, LOB |
Sequence ? help Back to Top |
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Protein Sequence Length: 259 aa Download sequence Send to blast |
MSHRNTRVIE CLVCRQQRRR HNQECEMGQY FPIDRHEDFD RACYIFGLNN IIRLMQSVEK 60 HQRHAAGNSI LLEGRAWRLY PSSGLLGYQL ELGSQVSSSL IELQNANRLL ELCRNHANQD 120 HDESNNPLLS LSLATPSSNP HLSNQLGSSA SQMSSLAITP IEHMGGVETM EAYKINQIMS 180 TRERGESSNT ASNRNTTLQE LQADDKGKQI VVEENESEAT NEEEDSTPME INAEPGDFSV 240 FCFCNLSVHF HYPYIPYAR |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_004509801.2 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_027192119.1 | 1e-174 | LOB domain-containing protein 22-like | ||||
TrEMBL | A0A3Q7XF64 | 1e-173 | A0A3Q7XF64_CICAR; LOB domain-containing protein 22-like | ||||
STRING | XP_004509801.1 | 1e-173 | (Cicer arietinum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF16300 | 8 | 9 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G19820.1 | 2e-15 | LOB domain-containing protein 9 |