PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_004509168.1

Organism

Cicer arietinum

Taxonomic ID

3827

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Cicereae; Cicer

Family

LBD

Protein Properties

Length: 312aa MW: 35616.6 Da PI: 6.919

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_004509168.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	129.5	1.5e-40	6	105	1	100
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaela 95 +CaaCk+lrrkC+++C lapyfp e+p++f nvh +FG snv+kll++++ e+r++a++slvyeA+ar++dP+yG+vg+++ lqq+l++ +a+++ XP_004509168.1 6 PCAACKYLRRKCEENCDLAPYFPPEHPQHFSNVHAVFGKSNVSKLLSEVNVEQRQEAVKSLVYEAQARMKDPIYGCVGLVSLLQQRLREIQADIE 100 7********************************************************************************************** PP DUF260 96 llkee 100 ++k+e XP_004509168.1 101 SAKKE 105 99987 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	25.208	5	106	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	1.9E-39	6	103	IPR004883	Lateral organ boundaries, LOB

Sequence ? help Back to Top
Protein Sequence Length: 312 aa Download sequence Send to blast
MAIDRPCAAC KYLRRKCEEN CDLAPYFPPE HPQHFSNVHA VFGKSNVSKL LSEVNVEQRQ 60 EAVKSLVYEA QARMKDPIYG CVGLVSLLQQ RLREIQADIE SAKKELANYL PPDVIQFALA 120 NPDAFFAQQN NPNSSPLESQ TITRNAQQMP TQNFIPDIQQ MTTVPPQNFN GGSRGELVNC 180 DTQHTPIVPS HNHWENLGFH DTQQTPIVPP KNDGGNFVIG NTQQQPTIPR ENIMGRRRQM 240 TIRHNFRRQN YLNDNFDYSI HDDLFGDDGD GGGLGHHLRV HDPSRRHVRL PFDGFDNSSS 300 FDYQNHQQRK HN

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5ly0_A	2e-40	6	109	11	114	LOB family transfactor Ramosa2.1
5ly0_B	2e-40	6	109	11	114	LOB family transfactor Ramosa2.1

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_004509168.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004509168.1	0.0	uncharacterized protein LOC101511490
TrEMBL	A0A1S2YSF8	0.0	A0A1S2YSF8_CICAR; uncharacterized protein LOC101511490
STRING	XP_004509168.1	0.0	(Cicer arietinum)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G66870.1	5e-47	ASYMMETRIC LEAVES 2-like 1