PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Cicereae; Cicer

Family

WRKY

Protein Properties

Length: 333aa MW: 36443.2 Da PI: 10.3519

Description

WRKY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_004509108.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRKY	99	3e-31	262	319	3	59
-SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 3 DgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 D y+WrKYGqK++kgs++pr+YY+C+s gCp++k+ver+ +d +++++tYegeHnh+ XP_004509108.1 262 DDYSWRKYGQKPIKGSPHPRGYYKCSSVrGCPARKHVERALDDASMLVVTYEGEHNHS 319 99**********************988**************************7 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF10533	9.3E-17	212	258	IPR018872	Zn-cluster domain
Gene3D	G3DSA:2.20.25.80	8.6E-33	248	319	IPR003657	WRKY domain
PROSITE profile	PS50811	30.607	255	321	IPR003657	WRKY domain
SuperFamily	SSF118290	1.1E-26	257	320	IPR003657	WRKY domain
SMART	SM00774	8.8E-38	260	320	IPR003657	WRKY domain
Pfam	PF03106	8.5E-27	262	318	IPR003657	WRKY domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0010200	Biological Process	response to chitin
GO:0005634	Cellular Component	nucleus
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0005516	Molecular Function	calmodulin binding
GO:0043565	Molecular Function	sequence-specific DNA binding
GO:0044212	Molecular Function	transcription regulatory region DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 333 aa Download sequence Send to blast
MAVELMTTGY RTDSFTAKAE ENAVQEAASG LESVEKLIKL LSEARHKYQS PSSSSSFSPS 60 NPNNPSFEIE RDCRAVADVA VSKFKRVISL LERTRTGHAR FRRAPLPQSP QNHPIQQTQQ 120 KKSKISESTI FNATPLQQIP PINLHRPFKD SSKTLNFSYS SSVAANSFIS SLTGGEIDSK 180 QPSSSSPAGT FQITNLSQVS SVGKPPLSSS LKRKCSSETL GSGKCGSSSS RCHCSKKSRK 240 LRLKRVVRVP AISLKMADIP PDDYSWRKYG QKPIKGSPHP RGYYKCSSVR GCPARKHVER 300 ALDDASMLVV TYEGEHNHSL SAPDATNLIL ESS

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
2ayd_A	1e-21	248	320	2	73	WRKY transcription factor 1
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00275	DAP	Transfer from AT2G23320	Download

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_004509108.1

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: By salicylic acid. {ECO:0000269\|PubMed:11449049}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	BT051268	1e-158	BT051268.1 Medicago truncatula clone MTYF1_F2_F3_F41G-K-3 unknown mRNA.
GenBank	BT145566	1e-158	BT145566.1 Medicago truncatula clone JCVI-FLMt-11M6 unknown mRNA.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004509108.1	0.0	probable WRKY transcription factor 15 isoform X1
Swissprot	O22176	2e-91	WRK15_ARATH; Probable WRKY transcription factor 15
TrEMBL	A0A1S2YSA1	0.0	A0A1S2YSA1_CICAR; probable WRKY transcription factor 15 isoform X1
STRING	XP_004509108.1	0.0	(Cicer arietinum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF2177	34	86

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G23320.1	2e-68	WRKY DNA-binding protein 15

Publications ? help Back to Top
Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Van Aken O, et al. Mitochondrial and Chloroplast Stress Responses Are Modulated in Distinct Touch and Chemical Inhibition Phases. Plant Physiol., 2016. 171(3): p. 2150-65 [PMID:27208304] Liu F, et al. Interactions of WRKY15 and WRKY33 transcription factors and their roles in the resistance of oilseed rape to Sclerotinia infection. Plant Biotechnol. J., 2018. 16(4): p. 911-925 [PMID:28929638]