![]() |
PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | XP_004509052.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Cicereae; Cicer
|
||||||||
Family | AP2 | ||||||||
Protein Properties | Length: 654aa MW: 73315.9 Da PI: 6.8269 | ||||||||
Description | AP2 family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 51.6 | 2.3e-16 | 311 | 370 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrd.pse.ng..kr.krfslgkfgtaeeAakaaiaarkkleg 55 s+y+GV++++++gr++A+++d ++ g ++ ++++lg ++ +e+Aa+a+++a++k++g XP_004509052.1 311 SQYRGVTRHRWTGRYEAHLWDnSCKkEGqsRKgRQVYLGGYDMEEKAARAYDQAALKYWG 370 78*******************988886678446*************************98 PP | |||||||
2 | AP2 | 46.4 | 9.6e-15 | 415 | 464 | 3 | 55 |
AP2 3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 y+GV+++++ grW A+I + +k +lg+f t eeAa+a++ a+ k++g XP_004509052.1 415 YRGVTRHHQHGRWQARIGRVAG---NKDLYLGTFSTQEEAAEAYDIAAIKFRG 464 9***************988532...5*************************98 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00018 | 8.78E-22 | 311 | 378 | No hit | No description |
SuperFamily | SSF54171 | 1.37E-16 | 311 | 380 | IPR016177 | DNA-binding domain |
Pfam | PF00847 | 6.8E-13 | 311 | 370 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 1.2E-16 | 312 | 379 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 18.913 | 312 | 378 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 2.1E-29 | 312 | 384 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 2.4E-6 | 313 | 324 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 5.83E-25 | 413 | 474 | No hit | No description |
SuperFamily | SSF54171 | 1.5E-17 | 413 | 473 | IPR016177 | DNA-binding domain |
Gene3D | G3DSA:3.30.730.10 | 1.3E-18 | 414 | 472 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 2.4E-33 | 414 | 478 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 19.19 | 414 | 472 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 1.7E-9 | 415 | 464 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 2.4E-6 | 454 | 474 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 654 aa Download sequence Send to blast |
MKRMENDDDG VDINNENNNW LGFSLSPQMN IGVSSHTHQS NASSSAASEV VPTSFYHSGS 60 LSNYGFSYGL EAENVGLYSV FPIMPLKSDG SLYGMEPLSR SQTQVMATNS APKLENFLDS 120 EAMGTPHYAC SSVITETMPL SLDSMFQNQV QHMNNQQQQF HNQNLSSYYS TLRNNDLLLE 180 GSKQSQTSSE SHHVSNMVED NGLTSLKSWV LRNFPTSHTN ESKMIVPVVE ENDQGECGSI 240 GSMAYGDLHS LSLSMSPSSQ SSCVTSSQRM SSPAVIDNSA VVDTKKRGHE KFEQKQIVHR 300 KSIDTFGQRT SQYRGVTRHR WTGRYEAHLW DNSCKKEGQS RKGRQVYLGG YDMEEKAARA 360 YDQAALKYWG PSTHINFPLE NYQNQLEEMK NMTRQEYVAH LRRKSSGFSR GASMYRGVTR 420 HHQHGRWQAR IGRVAGNKDL YLGTFSTQEE AAEAYDIAAI KFRGANAVTN FDITKYDVEK 480 IMSSSNLLSI ELARKNKEVD IGTTQYIDHN KSHSSSYDNT QETILMQKNM VLYQSSSQQQ 540 HEQNPPRTET EKTHQSFSTV SLDNMFHQEV VVEEPSKTRN RVSNPSSLAT SLNSSREGSP 600 DRTSLQNLSE SMPSKLLVSA PNSSNVNSWD PSTHLRPALS NLPQIPVFAA WTDA |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | XP_004509052.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_004509052.1 | 0.0 | AP2-like ethylene-responsive transcription factor ANT | ||||
TrEMBL | A0A1S2YS54 | 0.0 | A0A1S2YS54_CICAR; AP2-like ethylene-responsive transcription factor ANT | ||||
STRING | XP_004509052.1 | 0.0 | (Cicer arietinum) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF916 | 34 | 114 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT4G37750.1 | 1e-128 | AP2 family protein |