PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Cicereae; Cicer

Family

HD-ZIP

Protein Properties

Length: 247aa MW: 28121.9 Da PI: 8.7047

Description

HD-ZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_004508941.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	58.5	1.1e-18	95	149	2	56
T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 rk+ +++k+q +Lee F+++++++ +++ LAk+lgL rqV vWFqNrRa+ k XP_004508941.1 95 RKKLRLSKNQSAILEETFKQHNTLNPKQKLALAKQLGLRPRQVEVWFQNRRARTK 149 788899***********************************************98 PP
2	HD-ZIP_I/II	127.8	4.7e-41	95	184	1	91
HD-ZIP_I/II 1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreel 91 +kk+rlsk+q+++LEe+F+++++L+p++K +la++Lgl+prqv+vWFqnrRARtk+kq+E+d+e+Lkr++++l++en+rL+kev+eLr +l XP_004508941.1 95 RKKLRLSKNQSAILEETFKQHNTLNPKQKLALAKQLGLRPRQVEVWFQNRRARTKLKQTEVDCEVLKRCCENLTDENRRLQKEVQELR-AL 184 69*************************************************************************************9.55 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF04618	5.5E-17	24	74	IPR006712	HD-ZIP protein, N-terminal
Gene3D	G3DSA:1.10.10.60	6.5E-18	83	145	IPR009057	Homeodomain-like
SuperFamily	SSF46689	1.38E-18	87	152	IPR009057	Homeodomain-like
PROSITE profile	PS50071	17.265	91	151	IPR001356	Homeobox domain
SMART	SM00389	1.7E-15	93	155	IPR001356	Homeobox domain
CDD	cd00086	5.45E-15	95	152	No hit	No description
Pfam	PF00046	3.7E-16	95	149	IPR001356	Homeobox domain
PRINTS	PR00031	1.5E-5	122	131	IPR000047	Helix-turn-helix motif
PROSITE pattern	PS00027	0	126	149	IPR017970	Homeobox, conserved site
PRINTS	PR00031	1.5E-5	131	147	IPR000047	Helix-turn-helix motif
SMART	SM00340	3.1E-26	151	194	IPR003106	Leucine zipper, homeobox-associated
Pfam	PF02183	5.3E-12	151	185	IPR003106	Leucine zipper, homeobox-associated

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0009641	Biological Process	shade avoidance
GO:0009734	Biological Process	auxin-activated signaling pathway
GO:0009826	Biological Process	unidimensional cell growth
GO:0045892	Biological Process	negative regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 247 aa Download sequence Send to blast
MMLIQKEDLS LSLSLNFLHK FSSNSSDRNS ETLTRGIDVN RLPSTVIDCE EEETGVSSPN 60 STVSSVSGKR SERDDVDRAC SGGNISDEED AETARKKLRL SKNQSAILEE TFKQHNTLNP 120 KQKLALAKQL GLRPRQVEVW FQNRRARTKL KQTEVDCEVL KRCCENLTDE NRRLQKEVQE 180 LRALKLSPQF YMQMAPPTTL TMCPSCERVA VPSHPMAQPR TRPIHIGPWA SSAPLAHRPF 240 EFDVFRR

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	143	151	RRARTKLKQ

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor that plays a role in auxin-mediated morphogenesis. Negatively regulates lateral root elongation. {ECO:0000269\|PubMed:12492842}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00550	DAP	Transfer from AT5G47370	Download

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_004508941.1

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: By indole-3-acetic acid (IAA). {ECO:0000269\|PubMed:12492842}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	KP015566	1e-104	KP015566.1 Vicia sativa subsp. sativa SSR marker NAC-VSspS-98 mRNA sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004508941.1	0.0	homeobox-leucine zipper protein HAT4-like
Swissprot	P46601	3e-94	HAT2_ARATH; Homeobox-leucine zipper protein HAT2
TrEMBL	A0A1S2YRV8	0.0	A0A1S2YRV8_CICAR; homeobox-leucine zipper protein HAT4-like
STRING	XP_004508941.1	0.0	(Cicer arietinum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF1239	34	105

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G16780.1	3e-85	homeobox protein 2

Publications ? help Back to Top
Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Zou LJ, et al. Role of Transcription Factor HAT1 in Modulating Arabidopsis thaliana Response to Cucumber mosaic virus. Plant Cell Physiol., 2016. 57(9): p. 1879-89 [PMID:27328697]