PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_004508937.1
Organism
Cicer arietinum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Cicereae; Cicer
Family ERF
Protein Properties Length: 231aa    MW: 25696.7 Da    PI: 6.9704
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_004508937.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP255.61.3e-1770119255
             AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                      y+GVr +  +g+Wv+eIr+p++   + r++lg+f t+++Aa+a++ a+++++g
  XP_004508937.1  70 TYRGVRMRQ-WGKWVSEIREPRK---KSRIWLGTFPTPDMAARAHDVAALAIKG 119
                     69****998.**********843...6***********************9987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003802.2E-3670133IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.102.3E-3170128IPR001471AP2/ERF domain
SuperFamilySSF541712.48E-2170128IPR016177DNA-binding domain
PfamPF008476.2E-1270119IPR001471AP2/ERF domain
PROSITE profilePS5103223.06470127IPR001471AP2/ERF domain
PRINTSPR003676.6E-107182IPR001471AP2/ERF domain
CDDcd000187.22E-3371129No hitNo description
PRINTSPR003676.6E-1093109IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 231 aa     Download sequence    Send to blast
MDLEDFVLIH THELQSTTSI IASTSNSSSE EEATTTKKKT QHVKELSNSS IKEKKKKKMN  60
NNDIDGKHPT YRGVRMRQWG KWVSEIREPR KKSRIWLGTF PTPDMAARAH DVAALAIKGS  120
SAYLNFPELA AMLPRPASTS PKDIQAAAAK AAATFYNHPT RQLQLEAEAE PSQASSSSSH  180
NERSSLNGED DMFLNLPDLS LDYSSSAWLV TGAQHIDSAF RLEDSFLWDS C
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A3e-1760127472Ethylene-responsive transcription factor ERF096
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
13657KKKTQHVKELSNSSIKEKKKKK
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_004508937.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004508937.11e-172ethylene-responsive transcription factor ERF039
SwissprotQ8LBQ73e-55ERF34_ARATH; Ethylene-responsive transcription factor ERF034
TrEMBLA0A1S2YRU91e-170A0A1S2YRU9_CICAR; ethylene-responsive transcription factor ERF039
STRINGXP_004508937.11e-171(Cicer arietinum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF19234263
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G44940.12e-46ERF family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]