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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_004508937.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Cicereae; Cicer
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Family | ERF | ||||||||
Protein Properties | Length: 231aa MW: 25696.7 Da PI: 6.9704 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 55.6 | 1.3e-17 | 70 | 119 | 2 | 55 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 y+GVr + +g+Wv+eIr+p++ + r++lg+f t+++Aa+a++ a+++++g XP_004508937.1 70 TYRGVRMRQ-WGKWVSEIREPRK---KSRIWLGTFPTPDMAARAHDVAALAIKG 119 69****998.**********843...6***********************9987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00380 | 2.2E-36 | 70 | 133 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 2.3E-31 | 70 | 128 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 2.48E-21 | 70 | 128 | IPR016177 | DNA-binding domain |
Pfam | PF00847 | 6.2E-12 | 70 | 119 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 23.064 | 70 | 127 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 6.6E-10 | 71 | 82 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 7.22E-33 | 71 | 129 | No hit | No description |
PRINTS | PR00367 | 6.6E-10 | 93 | 109 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 231 aa Download sequence Send to blast |
MDLEDFVLIH THELQSTTSI IASTSNSSSE EEATTTKKKT QHVKELSNSS IKEKKKKKMN 60 NNDIDGKHPT YRGVRMRQWG KWVSEIREPR KKSRIWLGTF PTPDMAARAH DVAALAIKGS 120 SAYLNFPELA AMLPRPASTS PKDIQAAAAK AAATFYNHPT RQLQLEAEAE PSQASSSSSH 180 NERSSLNGED DMFLNLPDLS LDYSSSAWLV TGAQHIDSAF RLEDSFLWDS C |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5wx9_A | 3e-17 | 60 | 127 | 4 | 72 | Ethylene-responsive transcription factor ERF096 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 36 | 57 | KKKTQHVKELSNSSIKEKKKKK |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_004508937.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004508937.1 | 1e-172 | ethylene-responsive transcription factor ERF039 | ||||
Swissprot | Q8LBQ7 | 3e-55 | ERF34_ARATH; Ethylene-responsive transcription factor ERF034 | ||||
TrEMBL | A0A1S2YRU9 | 1e-170 | A0A1S2YRU9_CICAR; ethylene-responsive transcription factor ERF039 | ||||
STRING | XP_004508937.1 | 1e-171 | (Cicer arietinum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF192 | 34 | 263 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G44940.1 | 2e-46 | ERF family protein |
Publications ? help Back to Top | |||
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