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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_004508776.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Cicereae; Cicer
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Family | HD-ZIP | ||||||||
Protein Properties | Length: 324aa MW: 37363.1 Da PI: 4.6153 | ||||||||
Description | HD-ZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 58.6 | 1e-18 | 87 | 140 | 3 | 56 |
--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 k+++++ +q++ Le+ Fe ++++ e++++LAk lgL+ rqV +WFqNrRa++k XP_004508776.1 87 KKRRLSIDQVQFLEKSFEVENKLEPERKTKLAKDLGLQPRQVAIWFQNRRARWK 140 5568999**********************************************9 PP | |||||||
2 | HD-ZIP_I/II | 126.4 | 1.2e-40 | 86 | 178 | 1 | 93 |
HD-ZIP_I/II 1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelke 93 ekkrrls +qv++LE+sFe e+kLeperK++la++Lglqprqva+WFqnrRAR+ktkqlEkdye+L+++y++l+++ ++L ke+++L++e+++ XP_004508776.1 86 EKKRRLSIDQVQFLEKSFEVENKLEPERKTKLAKDLGLQPRQVAIWFQNRRARWKTKQLEKDYESLHHSYQSLQTDYDNLLKEKDRLKAEVAR 178 69**************************************************************************************99875 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF46689 | 5.13E-19 | 73 | 144 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50071 | 17.313 | 82 | 142 | IPR001356 | Homeobox domain |
SMART | SM00389 | 1.6E-18 | 85 | 146 | IPR001356 | Homeobox domain |
CDD | cd00086 | 2.11E-16 | 87 | 143 | No hit | No description |
Pfam | PF00046 | 6.0E-16 | 87 | 140 | IPR001356 | Homeobox domain |
Gene3D | G3DSA:1.10.10.60 | 1.7E-19 | 89 | 149 | IPR009057 | Homeodomain-like |
PRINTS | PR00031 | 1.3E-5 | 113 | 122 | IPR000047 | Helix-turn-helix motif |
PROSITE pattern | PS00027 | 0 | 117 | 140 | IPR017970 | Homeobox, conserved site |
PRINTS | PR00031 | 1.3E-5 | 122 | 138 | IPR000047 | Helix-turn-helix motif |
Pfam | PF02183 | 1.5E-15 | 142 | 183 | IPR003106 | Leucine zipper, homeobox-associated |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 324 aa Download sequence Send to blast |
MAGGSVFTNG SNMNILLQNQ QTPRGYTSQP LDSLFLSSSA PFFGSRSMLS FEDVDGGKRC 60 NRSFLNGFDM DENGDDGMDE YFHQSEKKRR LSIDQVQFLE KSFEVENKLE PERKTKLAKD 120 LGLQPRQVAI WFQNRRARWK TKQLEKDYES LHHSYQSLQT DYDNLLKEKD RLKAEVARLT 180 EKVAREKQEG KLDESESEKN GLKESVMKKS MVDSVSEGEG SKVSIVEACN NNNNNNNKIE 240 DISSARSDIL DCESPRYTDG VLVRNDAFEP EYQSDISQDE EENLLPPYIF TKLEDVNYSN 300 PPHTSSTYQF QEEEDHHALW PWSY |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 134 | 142 | RRARWKTKQ |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_004508776.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004508776.1 | 0.0 | homeobox-leucine zipper protein ATHB-16-like | ||||
TrEMBL | A0A1S2YRI5 | 0.0 | A0A1S2YRI5_CICAR; homeobox-leucine zipper protein ATHB-16-like | ||||
STRING | XP_004508776.1 | 0.0 | (Cicer arietinum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1500 | 34 | 99 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G01470.1 | 6e-42 | homeobox 1 |