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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_004508663.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Cicereae; Cicer
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Family | TCP | ||||||||
Protein Properties | Length: 353aa MW: 39215.4 Da PI: 8.3578 | ||||||||
Description | TCP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | TCP | 85.3 | 1.5e-26 | 52 | 152 | 3 | 66 |
TCP 3 gkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgt................................ 65 g+kdrhsk++T +g+RdRR+Rls+++a++++dLqd+LG+ ++sk ++WL+++ + i++l+ + XP_004508663.1 52 GGKDRHSKVCTIRGLRDRRIRLSVPTAIQLYDLQDRLGLSQPSKVVDWLIEATQSDIDKLPPLdipqcftshfhhhqlpppgtsfslggfydqnn 146 78*************************************************************66665555555554444444444444444444 PP TCP 66 .....s 66 XP_004508663.1 147 gmaktR 152 333330 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03634 | 8.4E-23 | 53 | 150 | IPR005333 | Transcription factor, TCP |
PROSITE profile | PS51369 | 28.48 | 53 | 111 | IPR017887 | Transcription factor TCP subgroup |
Sequence ? help Back to Top |
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Protein Sequence Length: 353 aa Download sequence Send to blast |
MMIENSSESY EAKQEGGDGI MKSEKLAGAG STSRQWTSLR NPRIVRVSRS LGGKDRHSKV 60 CTIRGLRDRR IRLSVPTAIQ LYDLQDRLGL SQPSKVVDWL IEATQSDIDK LPPLDIPQCF 120 TSHFHHHQLP PPGTSFSLGG FYDQNNGMAK TRYNNWDIDS SVGRLKGKEA ENVCMDSEKS 180 KLWMKSTNEQ FGSNYFSNSS PSVHGLSSYH NLDPSSTLSL SQFGNSGNNI FPYYHQQVES 240 HHNSGTVMQF SSSSFTNGNS QLLFCPSSVS LFSNNNNSLE TTDNHAARQH LHHQILNSSS 300 SSLSSSSSSS HALMMPLIPT LHLPINSPFR RLPLPFSSKL LDSDHDNNNT RNG |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5zkt_A | 1e-19 | 58 | 112 | 1 | 55 | Putative transcription factor PCF6 |
5zkt_B | 1e-19 | 58 | 112 | 1 | 55 | Putative transcription factor PCF6 |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_004508663.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004508663.1 | 0.0 | transcription factor TCP17 | ||||
TrEMBL | A0A1S2YR82 | 0.0 | A0A1S2YR82_CICAR; transcription factor TCP17 | ||||
STRING | XP_004508663.1 | 0.0 | (Cicer arietinum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF932 | 34 | 119 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G60970.1 | 2e-46 | TEOSINTE BRANCHED 1, cycloidea and PCF transcription factor 5 |