PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_004508615.1
Organism
Cicer arietinum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Cicereae; Cicer
Family TALE
Protein Properties Length: 308aa    MW: 35567.9 Da    PI: 5.3216
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_004508615.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox23.21.2e-072482802254
                     SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS
        Homeobox  22 nrypsaeereeLAkklgLterqVkvWFqNrRak 54 
                      +yp++e++++L +++gL+ +q+ +WF N+R +
  XP_004508615.1 248 WPYPTEEDKARLVQETGLQLKQINNWFINQRKR 280
                     59*****************************87 PP
2ELK30.86.6e-11201222122
             ELK   1 ELKhqLlrKYsgyLgsLkqEFs 22 
                     ELKh+L+++Y+++++++++E++
  XP_004508615.1 201 ELKHELKQGYKEKIVDVREEIL 222
                     9*******************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM012552.9E-173377IPR005540KNOX1
PfamPF037901.7E-163576IPR005540KNOX1
SMARTSM012562.1E-2386142IPR005541KNOX2
PfamPF037915.6E-1795141IPR005541KNOX2
PROSITE profilePS512139.83201221IPR005539ELK domain
PfamPF037893.9E-7201222IPR005539ELK domain
SMARTSM011888.9E-4201222IPR005539ELK domain
PROSITE profilePS5007111.596221284IPR001356Homeobox domain
SuperFamilySSF466895.56E-16223288IPR009057Homeodomain-like
SMARTSM003891.8E-10223288IPR001356Homeobox domain
CDDcd000861.88E-10224283No hitNo description
Gene3DG3DSA:1.10.10.607.0E-25228284IPR009057Homeodomain-like
PfamPF059207.6E-18241280IPR008422Homeobox KN domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 308 aa     Download sequence    Send to blast
MAYEENIEEE IGYQRFTEEE EESEKNCETE ELREYKTEIL GHPLYDQLLS AHVSCLRIAT  60
PVDQLPRIDA QLQHSQRVLQ KYSSLRISNR LIDPKDLDHF MTHYVLLLCA FKEQLQQHVR  120
VHAMEAVMAC WDLEQSLQTL TGVSSGEGTG ATMSDDEEEQ AESNAKLLYE SGSLDGVDTL  180
GFGPLVPTET ERSLMERVRL ELKHELKQGY KEKIVDVREE ILRKRRAGKL PGDTTSLLKA  240
WWQSHSKWPY PTEEDKARLV QETGLQLKQI NNWFINQRKR NWHANSPSST NSKTKRKSAG  300
ESSNQSFM
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_004508615.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT1386280.0BT138628.1 Medicago truncatula clone JCVI-FLMt-17B3 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027192813.10.0homeobox protein knotted-1-like 4 isoform X1
SwissprotP480011e-157KNAT4_ARATH; Homeobox protein knotted-1-like 4
TrEMBLA0A3Q7XWB40.0A0A3Q7XWB4_CICAR; homeobox protein knotted-1-like 4 isoform X1
STRINGXP_004508615.10.0(Cicer arietinum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF101734108
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G11060.11e-160KNOTTED1-like homeobox gene 4
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]