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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_004508520.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Cicereae; Cicer
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Family | C3H | ||||||||
Protein Properties | Length: 520aa MW: 59167 Da PI: 6.561 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 18.1 | 4.8e-06 | 84 | 107 | 3 | 27 |
S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHgp 27 t++C +f+ G+C+ G+rC+F Hgp XP_004508520.1 84 TVPCFYFFN-GFCNKGNRCSFLHGP 107 889999999.*************96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50103 | 10.286 | 6 | 35 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF15663 | 2.1E-11 | 7 | 61 | No hit | No description |
SMART | SM00356 | 0.0068 | 7 | 34 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 10.615 | 37 | 63 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 0.37 | 39 | 62 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 0.0013 | 81 | 107 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 15.103 | 81 | 108 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 1.7E-5 | 81 | 106 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 1.8E-6 | 84 | 109 | IPR000571 | Zinc finger, CCCH-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 520 aa Download sequence Send to blast |
MDEDLLKRNT DCVYFLASPL TCKKGAECEY RHHEIARLNP RDCWFWLAGN CLNPTCAFRH 60 PPLDGHTGVP SEPLQSSVPA NKTTVPCFYF FNGFCNKGNR CSFLHGPSDS LLTVKPLKND 120 NGSSKALNSE NKTSSGNITC VASAPSETHF DRSLSVPKAL SDFKLQPKEV LQVPLPENVK 180 QKGDCLELSA SDYKETAMTR SNSLLPDDGV AHNMSHLSTE QSSDEQINSH VEPEERWESS 240 PGFDVLVHDE SGNLGYEDDS EYLPVLDMNE QELNEQYSGY EFKDTVEYDT LCSDTDILYE 300 QGTCDDYRCF DSDFTNANGR KVCGYSREMV VDSIFSRKRI RMSAAEMSDC DSDLDLRDHL 360 RRRREGNVPP VTGFLRRHDL PSLMVRNSVR HQRQGTGQRQ NRRLTSQLEF SSMREVETLS 420 IANKERFRPF QQNRPRKHYG ENLDNRPFLS SMVSRKPVVK QQRFIQESTT FSGPKTLAEI 480 KEEKKKKKKV GESSHRESIS AGFQDPKPLS EILKDRRTIG |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_004508520.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004508520.1 | 0.0 | zinc finger CCCH domain-containing protein 32-like | ||||
TrEMBL | A0A1S2YQW9 | 0.0 | A0A1S2YQW9_CICAR; zinc finger CCCH domain-containing protein 32-like | ||||
STRING | XP_004508520.1 | 0.0 | (Cicer arietinum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF13092 | 18 | 23 |