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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_004508482.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Cicereae; Cicer
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Family | YABBY | ||||||||
Protein Properties | Length: 191aa MW: 21756.9 Da PI: 8.5067 | ||||||||
Description | YABBY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | YABBY | 216.2 | 1e-66 | 6 | 164 | 3 | 170 |
YABBY 3 vfssseqvCyvqCnfCntilavsvPstslfkvvtvrCGhCtsllsvnlakasqllaaeshldeslkeelleelkveeenlksnvekeesastsvs 97 ++ ++eq+Cy+ CnfCn +lavsvP +slf +vtvrCGhC++l svn+a a q l+ ++h ++l++ + + ++ +++ s+s+ + XP_004508482.1 6 IDVATEQLCYIPCNFCNIVLAVSVPCSSLFDIVTVRCGHCSNLWSVNMAAAFQSLSWQEH------HHLQAPSHCMNP---EYRIRSGSTSKCND 91 66789***************************************************9999......333333333332...33444555555555 PP YABBY 98 seklsenedeevprvppvirPPekrqrvPsaynrfikeeiqrikasnPdishreafsaaaknWahfPkihfgl 170 + + + ++++ v+rPPekrqrvPsayn+fikeeiqrika+nPdishreafs+aaknWahfP+ihfgl XP_004508482.1 92 RIAMRTAPTTHLTEERVVNRPPEKRQRVPSAYNQFIKEEIQRIKANNPDISHREAFSTAAKNWAHFPHIHFGL 164 555566666667766779*****************************************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF04690 | 6.5E-71 | 9 | 164 | IPR006780 | YABBY protein |
SuperFamily | SSF47095 | 4.32E-8 | 108 | 157 | IPR009071 | High mobility group box domain |
Gene3D | G3DSA:1.10.30.10 | 1.4E-4 | 112 | 158 | IPR009071 | High mobility group box domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009944 | Biological Process | polarity specification of adaxial/abaxial axis | ||||
GO:1902183 | Biological Process | regulation of shoot apical meristem development | ||||
GO:2000024 | Biological Process | regulation of leaf development |
Sequence ? help Back to Top |
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Protein Sequence Length: 191 aa Download sequence Send to blast |
MSTCSIDVAT EQLCYIPCNF CNIVLAVSVP CSSLFDIVTV RCGHCSNLWS VNMAAAFQSL 60 SWQEHHHLQA PSHCMNPEYR IRSGSTSKCN DRIAMRTAPT THLTEERVVN RPPEKRQRVP 120 SAYNQFIKEE IQRIKANNPD ISHREAFSTA AKNWAHFPHI HFGLMLETNN QAKMENVSEK 180 RLMSRAALMN K |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Promotes adaxial cell identity. Regulates the initiation of embryonic shoot apical meristem (SAM) development. {ECO:0000269|PubMed:19837869}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_004508482.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT052446 | 0.0 | BT052446.1 Medicago truncatula clone MTYFD_FE_FF_FG1G-L-9 unknown mRNA. | |||
GenBank | BT133581 | 0.0 | BT133581.1 Medicago truncatula clone JCVI-FLMt-10H8 unknown mRNA. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004508482.1 | 1e-143 | axial regulator YABBY 5 | ||||
Swissprot | Q8GW46 | 7e-87 | YAB5_ARATH; Axial regulator YABBY 5 | ||||
TrEMBL | A0A1S2YQV0 | 1e-141 | A0A1S2YQV0_CICAR; axial regulator YABBY 5 | ||||
STRING | XP_004508482.1 | 1e-142 | (Cicer arietinum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1124 | 34 | 112 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G26580.2 | 3e-89 | YABBY family protein |
Publications ? help Back to Top | |||
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