PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_004507197.1
Organism
Cicer arietinum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Cicereae; Cicer
Family TALE
Protein Properties Length: 641aa    MW: 71894.7 Da    PI: 7.7605
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_004507197.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox29.61.2e-094174541954
                     HHH..SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS
        Homeobox  19 Fek..nrypsaeereeLAkklgLterqVkvWFqNrRak 54 
                     Fe   ++yp+ +++  LAk++gL+ +qV++WF N R +
  XP_004507197.1 417 FEHflHPYPTDTDKIMLAKQTGLSRSQVSNWFINARVR 454
                     554459******************************88 PP
2BELL971.5e-31291355872
            BELL   8 kkakLlslleeVdkrYkqyveqlqtvissFeavaglgsakpYtslAlkaiSrhFrcLkdaiaeqi 72 
                      k++Ll++l+eV+krY+qy++q+q v+ sFe v gl++a+pY+slA k +S+hFrcLk ai++q+
  XP_004507197.1 291 NKSRLLTMLDEVYKRYRQYYQQMQSVVTSFEYVSGLNNAAPYASLAIKSMSKHFRCLKKAITDQL 355
                     699***********************************************************997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005741.3E-37223353IPR006563POX domain
PfamPF075261.8E-34228352IPR006563POX domain
PROSITE profilePS5007112.098395458IPR001356Homeobox domain
SMARTSM003891.5E-10398462IPR001356Homeobox domain
CDDcd000862.00E-12398459No hitNo description
SuperFamilySSF466892.87E-17400465IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.602.9E-28401462IPR009057Homeodomain-like
PfamPF059205.0E-19415454IPR008422Homeobox KN domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010051Biological Processxylem and phloem pattern formation
GO:0010076Biological Processmaintenance of floral meristem identity
GO:0010077Biological Processmaintenance of inflorescence meristem identity
GO:0010089Biological Processxylem development
GO:0010154Biological Processfruit development
GO:0010223Biological Processsecondary shoot formation
GO:0010228Biological Processvegetative to reproductive phase transition of meristem
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:0048457Biological Processfloral whorl morphogenesis
GO:0048645Biological Processorgan formation
GO:0080006Biological Processinternode patterning
GO:0005634Cellular Componentnucleus
GO:0005829Cellular Componentcytosol
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 641 aa     Download sequence    Send to blast
MADEGFEGYH VPQQSRRDKL RVVVAQNNSS SCSSSLVVEP LLPFYDSSSF ITTTNFTSNQ  60
HNNNNQSLKQ NLFSSSIKDL ECSNFMMRGE GKRVMNISSS NSSTISHHPY LEHLNNNQGN  120
IQVINSNSSS SNNNNVNNNN NNNPFFYQAQ NLQNLRNFEE QNSTTMMLNH EPLSLSLSSH  180
KSGSNLPLEL NLDQRYGSMI YGSGGVIQGL VEGGGSGGSV PFTGYASVLK DSRFLKPAQQ  240
LLEEMCDLGG RGVCVEKVVV VGDSSLMMES PLERLCEEDS FGDHSGGEGR NKSRLLTMLD  300
EVYKRYRQYY QQMQSVVTSF EYVSGLNNAA PYASLAIKSM SKHFRCLKKA ITDQLQFNNK  360
AHFHTSIRKD ESPRFGSSER GGPYSHRSGF LDQQQPVWRP QRGLPERAVT VLRAWLFEHF  420
LHPYPTDTDK IMLAKQTGLS RSQVSNWFIN ARVRLWKPMV EEIHMLETRQ APKDSQKEEH  480
FRNKSNDHHL SSNTSLVSEN PSPSTDKFHD GTYKRVVNEI PNISIRRQGQ QQQQQMNLPL  540
QQVGVGMSMG SGSSNNNNNN NNNNNNSNNI NNNSNVSLTL GLYQNHGIGL AEPFPLSAAQ  600
RFGIGLETNN EGYNVMSGFE TQNRHFGRDV IGGQMFHDFV G
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3k2a_A1e-15404462563Homeobox protein Meis2
3k2a_B1e-15404462563Homeobox protein Meis2
4xrs_A1e-15404461158Homeobox protein Meis1
4xrs_B1e-15404461158Homeobox protein Meis1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_004507197.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004507197.10.0BEL1-like homeodomain protein 9
TrEMBLA0A1S2YMU40.0A0A1S2YMU4_CICAR; BEL1-like homeodomain protein 9
STRINGXP_004507197.10.0(Cicer arietinum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF28103373
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G02030.19e-82TALE family protein