PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_004506676.1
Organism
Cicer arietinum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Cicereae; Cicer
Family WRKY
Protein Properties Length: 576aa    MW: 63199.9 Da    PI: 7.1896
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_004506676.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY97.96.3e-31236293260
                     --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS-- CS
            WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhek 60 
                     dDgynWrKYGqK vkg efprsYY+Ct+++C+vkk  ers+ d++++ei+Y+g+H+h+k
  XP_004506676.1 236 DDGYNWRKYGQKLVKGCEFPRSYYKCTHPNCEVKKLFERSH-DGQITEIVYKGTHDHPK 293
                     8****************************************.***************85 PP
2WRKY106.21.6e-33395453159
                     ---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
            WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                     ldDgy+WrKYGqK+v+g+++prsYY+Ct agCpv+k+ver+++dpk+v++tYeg+Hnh+
  XP_004506676.1 395 LDDGYRWRKYGQKVVRGNPNPRSYYKCTNAGCPVRKHVERASHDPKAVITTYEGKHNHD 453
                     59********************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5081123.227230294IPR003657WRKY domain
Gene3DG3DSA:2.20.25.801.5E-26232294IPR003657WRKY domain
SuperFamilySSF1182902.09E-24234294IPR003657WRKY domain
SMARTSM007744.5E-33235293IPR003657WRKY domain
PfamPF031065.5E-24236292IPR003657WRKY domain
Gene3DG3DSA:2.20.25.801.3E-37380455IPR003657WRKY domain
SuperFamilySSF1182902.35E-29387455IPR003657WRKY domain
PROSITE profilePS5081138.825390455IPR003657WRKY domain
SMARTSM007743.1E-39395454IPR003657WRKY domain
PfamPF031063.5E-26396453IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009611Biological Processresponse to wounding
GO:0009961Biological Processresponse to 1-aminocyclopropane-1-carboxylic acid
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 576 aa     Download sequence    Send to blast
MDAGEPQFRR QTPGKMEHDD PNRTMSRTDS ASEVAATSGA RYKLMSPAKL PISRSPVLTI  60
PPGLSPTSFL ESPVLLSNMK VEPSPTTGSL PRLQQTAHGF VTSSTSATFP VTAVCFNSNT  120
VDDGKSSFFE FKPHSRSNMV PADFNNHACE KSTQIDGQGK VQSFVSTPLV KSEIAVSSDE  180
ISLSSPRQMV SSGASAHVEV DLDELNPSGN VATRLQASQV DGRGSGLSVA ADRASDDGYN  240
WRKYGQKLVK GCEFPRSYYK CTHPNCEVKK LFERSHDGQI TEIVYKGTHD HPKPQPSRRY  300
SGGTIMSVHE ERSDKASLTG REAERDSTPD LSPIATNDDS PEAAGFLSNR NIDEVDEDDP  360
FSKRSRKMDL DITPVVKPIR EPRVVVQTLS EVDILDDGYR WRKYGQKVVR GNPNPRSYYK  420
CTNAGCPVRK HVERASHDPK AVITTYEGKH NHDVPTARNN SHDMAGPSAA GGQHTRIRHE  480
ESDTISLDLG MGISPTAENR TNSQGRMMLN EYGDNQTHTN NSSFKFVHTT PPPVYYGVLN  540
NNSNPYGSRE NSNDSSSLNH SAYPCPTNIG RILMGP
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A9e-37236455877Probable WRKY transcription factor 4
2lex_A9e-37236455877Probable WRKY transcription factor 4
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element. {ECO:0000250|UniProtKB:Q9SI37}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00455DAPTransfer from AT4G26640Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_004506676.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004506676.10.0probable WRKY transcription factor 20 isoform X1
SwissprotQ93WV00.0WRK20_ARATH; Probable WRKY transcription factor 20
TrEMBLA0A1S2YLR40.0A0A1S2YLR4_CICAR; probable WRKY transcription factor 20 isoform X1
STRINGXP_004506676.10.0(Cicer arietinum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF39463463
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G26640.20.0WRKY family protein