PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_004506223.1
Organism
Cicer arietinum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Cicereae; Cicer
Family TALE
Protein Properties Length: 636aa    MW: 71027.7 Da    PI: 7.3185
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_004506223.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox28.13.5e-093914281954
                     HHH..SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS
        Homeobox  19 Fek..nrypsaeereeLAkklgLterqVkvWFqNrRak 54 
                     Fe   ++yp+ +++  LA+++gLt +qV++WF N R +
  XP_004506223.1 391 FEHflHPYPKDSDKVMLARQTGLTRSQVSNWFINARVR 428
                     554459******************************88 PP
2BELL114.17.3e-37254325172
            BELL   1 erqelqkkkakLlslleeVdkrYkqyveqlqtvissFeavaglgsakpYtslAlkaiSrhFrcLkdaiaeqi 72 
                     +rqelq+kk+kL+s+l+eV+ rY+qy++++q+v ssFe++ag+g++k+YtslAlk+iS++Fr+Lkdai++qi
  XP_004506223.1 254 QRQELQMKKSKLVSMLDEVELRYRQYHHEMQVVTSSFEQAAGYGASKSYTSLALKTISKQFRSLKDAICSQI 325
                     69*********************************************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005742.3E-61187323IPR006563POX domain
PfamPF075262.4E-46194321IPR006563POX domain
PROSITE profilePS5007112.212369432IPR001356Homeobox domain
SMARTSM003891.0E-9372436IPR001356Homeobox domain
CDDcd000867.47E-12372433No hitNo description
SuperFamilySSF466895.56E-17373438IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.6E-28375438IPR009057Homeodomain-like
PfamPF059207.4E-18389428IPR008422Homeobox KN domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 636 aa     Download sequence    Send to blast
MYFHCNNNSS EFQPSAEGLQ TLYLMNPNYV PYSHSPHTQN MLFNATTNNS SSHHALDLVK  60
SPHAPSFTLP SISNFHGSNT ADTPTQHYEL SGFHALASAA NATSRSHYNL WGSGNLIPDQ  120
SVTATTTNSV VVAVTTTAAA EFPPQIDFHM PIYQRSLSLS LSSNQTPYRS VSGEVEVCPS  180
SRGGGISSMH GVFLGSKYLK AAQELLDEFV NVDKGIYKGE NSNNNNKEKK KTNVEWSSSG  240
DGGKLQVGEL STAQRQELQM KKSKLVSMLD EVELRYRQYH HEMQVVTSSF EQAAGYGASK  300
SYTSLALKTI SKQFRSLKDA ICSQIKRTSK SLGEDDCLGV KVEGSSRLRF VDHHLRQQRA  360
LQQLGMIQNN AWRPQRGLPE RAVSVLRAWL FEHFLHPYPK DSDKVMLARQ TGLTRSQVSN  420
WFINARVRLW KPMVEEMYLE EIKDQEHNND NTNRSKESSK ELDQNNVLHS KTEIFNNQNT  480
SQKEISNNSN NSLSTSPIGG GTFRESNNTK FEVEIEGNHY KDGYSLMTEN ENHINGGDFG  540
SFSMDNIGRF NVSDQQLAPK CHGNGVSLTL GLPHNENVSL SSTQHGFLSQ NIHLGGRINE  600
MGGNENEFCA INNNNESVDI QNRKRFAAQL LRNFVV
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3k2a_A3e-16378436563Homeobox protein Meis2
3k2a_B3e-16378436563Homeobox protein Meis2
4xrm_A3e-16378436563Homeobox protein Meis2
4xrm_B3e-16378436563Homeobox protein Meis2
4xrs_A3e-16378435158Homeobox protein Meis1
4xrs_B3e-16378435158Homeobox protein Meis1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_004506223.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1454580.0AC145458.3 Cicer arietinum strain FLIP84-92C clone gl1-4n10, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004506223.10.0BEL1-like homeodomain protein 1
TrEMBLA0A1S2YKN10.0A0A1S2YKN1_CICAR; BEL1-like homeodomain protein 1
STRINGXP_004506223.10.0(Cicer arietinum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF16273492
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G35940.31e-108BEL1-like homeodomain 1