PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_004505999.1
Organism
Cicer arietinum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Cicereae; Cicer
Family HD-ZIP
Protein Properties Length: 844aa    MW: 92488.3 Da    PI: 6.2122
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_004505999.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox57.72e-182684357
                    --SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS
        Homeobox  3 kRttftkeqleeLeelFeknrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57
                    k  ++t+eq+e+Le+++ ++++ps  +r++L +++    +++ +q+kvWFqNrR +ek+
  XP_004505999.1 26 KYVRYTSEQVEALERVYSECPKPSSMRRQQLIRECpilsNIEPKQIKVWFQNRRCREKQ 84
                    56789****************************************************97 PP
2START1532.5e-481653722204
                     HHHHHHHHHHHHHHHC-TT-EEEEEXCCTTEEEEEEESSS.SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-SEEEEEEEECTT..EEEEEE CS
           START   2 laeeaaqelvkkalaeepgWvkssesengdevlqkfeeskvdsgealrasgvvdmvlallveellddkeqWdetlakaetlevissg..galqlm 94 
                     +aee+++e+++ka+ ++  Wv+++ +++g++++ +f+ s+++sg a+ra+g+v  +++   +e+l+d++ W + ++  e+    s g  g+++l 
  XP_004505999.1 165 IAEETLTEFLSKATGTAVDWVQMPGMKPGPDSVGIFAISQSCSGVAARACGLVSLEPT-KIAEILKDRLSWFRECRNLEVFTMFSAGngGTIELV 258
                     789*******************************************************.8888888888*******9999999999999****** PP

                     EEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--....-TTSEE-EESSEEEEEEEECTCEEEEEEEE-EE--SSXXHHHHHHHH CS
           START  95 vaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppe...sssvvRaellpSgiliepksnghskvtwvehvdlkgrlphwllrslv 185
                     +++++a+++l+p Rdf+++Ry+ +l  g++v++++S++ +   p+    +++vRa +lpSg+li+p+++g+s +++v+h +l+ ++++++lr+l+
  XP_004505999.1 259 YTQTYAPTTLAPaRDFWTLRYTITLDNGSLVVCERSLSGTGTGPNsasAAQFVRADMLPSGYLIRPCDGGGSIIHIVDHLNLEPWSVPEVLRPLY 353
                     **************************************9999998888999******************************************** PP

                     HHHHHHHHHHHHHHTXXXX CS
           START 186 ksglaegaktwvatlqrqc 204
                     +s  + ++k++ a+l++ +
  XP_004505999.1 354 ESPKVVAQKMTIAALRYIR 372
                     **************99865 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5007115.4352185IPR001356Homeobox domain
SMARTSM003893.1E-152389IPR001356Homeobox domain
SuperFamilySSF466891.63E-162588IPR009057Homeodomain-like
CDDcd000863.71E-162686No hitNo description
PfamPF000465.2E-162784IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.602.2E-182884IPR009057Homeodomain-like
CDDcd146862.37E-678117No hitNo description
PROSITE profilePS5084825.927155383IPR002913START domain
CDDcd088759.07E-69159375No hitNo description
Gene3DG3DSA:3.30.530.201.1E-17164347IPR023393START-like domain
SMARTSM002342.0E-37164374IPR002913START domain
SuperFamilySSF559615.36E-33164376No hitNo description
PfamPF018528.9E-46165372IPR002913START domain
PfamPF086704.2E-47700843IPR013978MEKHLA
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009855Biological Processdetermination of bilateral symmetry
GO:0009944Biological Processpolarity specification of adaxial/abaxial axis
GO:0009956Biological Processradial pattern formation
GO:0010014Biological Processmeristem initiation
GO:0010051Biological Processxylem and phloem pattern formation
GO:0010089Biological Processxylem development
GO:0030154Biological Processcell differentiation
GO:0005634Cellular Componentnucleus
GO:0008289Molecular Functionlipid binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 844 aa     Download sequence    Send to blast
MAMAVAQHRE SSSSGGSIDK HLDSGKYVRY TSEQVEALER VYSECPKPSS MRRQQLIREC  60
PILSNIEPKQ IKVWFQNRRC REKQRKEASR LQTVNRKLSA MNKLLMEEND RLQKQVSQLV  120
CENGFMRQQL HTPSAATTDA SCDSVVTTPQ NSKRDANNPA GLLSIAEETL TEFLSKATGT  180
AVDWVQMPGM KPGPDSVGIF AISQSCSGVA ARACGLVSLE PTKIAEILKD RLSWFRECRN  240
LEVFTMFSAG NGGTIELVYT QTYAPTTLAP ARDFWTLRYT ITLDNGSLVV CERSLSGTGT  300
GPNSASAAQF VRADMLPSGY LIRPCDGGGS IIHIVDHLNL EPWSVPEVLR PLYESPKVVA  360
QKMTIAALRY IRQIAQESSG EVTYGLGRQP AVLRTFSQRL SRGFNDAVNG FNDDGWSILN  420
CDGAEDVIIA VNSTKNLSGT SNPASSLTFL GGILCAKASM LLQNVPPAVL VRFLREHRSE  480
WADFNVDAYS AASLKAGNYA YPGMRPTRFT GNQIIMPLGH TIEHEEMLEV IRLEGHSLAQ  540
EDAFVSRDIH LLQICSGTDE NAVGTCSELI FAPIDEMFPD DAPLVPSGFR IIPLDSKPGD  600
KKDAVNSNRT LDLASGIDMS PATTHGGVDS SASQNTRSVL TIAFQFPFDS SMQENVAIMA  660
RQYVRSVISS VQRVAMVISP SGLNPAVGAK LSSGSPEAVT LAHWICQSYS YYLGTDLLRS  720
DSLVGDLMLK QLWHHPDAIL CCSLKSQPVF VFANQAGLDM LETTLVTLQD ITLDKIFDES  780
GRKALCSDFA KLMQLGFAYL PAGICMSTMA RHVSYEQAIA WKVLTAEDNS VHCLAFSFIN  840
WSFV
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in the regulation of interfascicular fiber (cortical cells) and secondary xylem differentiation in the inflorescence stems. Required for lateral shoot meristems (LSMs) and flower meristems (FMs) initiation. May be involved in the determination of vascular patterning and organ polarity (PubMed:10559440, PubMed:11169198, PubMed:11402186, PubMed:15111711, PubMed:15598805, PubMed:7555701). Directly regulates the expression of AGO10, ZPR1, ZPR2, ZPR3 and ZPR4 (PubMed:22781836). Required to regulate adaxial-abaxial polarity and leaf axial patterning (PubMed:20807212). {ECO:0000269|PubMed:10559440, ECO:0000269|PubMed:11169198, ECO:0000269|PubMed:11402186, ECO:0000269|PubMed:15111711, ECO:0000269|PubMed:15598805, ECO:0000269|PubMed:20807212, ECO:0000269|PubMed:22781836, ECO:0000269|PubMed:7555701}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_004505999.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By auxin. Repressed by ZPR and miR165. Induced by DOF5.1 (PubMed:20807212). {ECO:0000269|PubMed:15111711, ECO:0000269|PubMed:17237362, ECO:0000269|PubMed:20807212}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004505999.10.0homeobox-leucine zipper protein REVOLUTA-like
SwissprotQ9SE430.0REV_ARATH; Homeobox-leucine zipper protein REVOLUTA
TrEMBLA0A1S2YKJ70.0A0A1S2YKJ7_CICAR; homeobox-leucine zipper protein REVOLUTA-like
STRINGXP_004505999.10.0(Cicer arietinum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF66333147
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G60690.10.0HD-ZIP family protein
Publications ? help Back to Top
  1. Lian H,Li X,Liu Z,He Y
    HYL1 is required for establishment of stamen architecture with four microsporangia in Arabidopsis.
    J. Exp. Bot., 2013. 64(11): p. 3397-410
    [PMID:23918970]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Baima S, et al.
    Negative feedback regulation of auxin signaling by ATHB8/ACL5-BUD2 transcription module.
    Mol Plant, 2014. 7(6): p. 1006-1025
    [PMID:24777988]
  4. Jia X, et al.
    Functional plasticity of miR165/166 in plant development revealed by small tandem target mimic.
    Plant Sci., 2015. 233: p. 11-21
    [PMID:25711809]
  5. Roodbarkelari F,Du F,Truernit E,Laux T
    ZLL/AGO10 maintains shoot meristem stem cells during Arabidopsis embryogenesis by down-regulating ARF2-mediated auxin response.
    BMC Biol., 2015. 13: p. 74
    [PMID:26358077]
  6. Shi B, et al.
    Two-Step Regulation of a Meristematic Cell Population Acting in Shoot Branching in Arabidopsis.
    PLoS Genet., 2016. 12(7): p. e1006168
    [PMID:27398935]