PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_004505626.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Cicereae; Cicer
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Family | LBD | ||||||||
Protein Properties | Length: 202aa MW: 23290.1 Da PI: 8.643 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 116.3 | 2e-36 | 13 | 111 | 1 | 99 |
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaela 95 aCaaCk++r+kC+++C+lapyfp++++ +f++vhk+FG+sn++kl+k+++e++r+++++sl++eA +r+rdP++G +g ++k+ ++++++ el+ XP_004505626.1 13 ACAACKHQRKKCSENCILAPYFPSNRNCDFKAVHKVFGVSNITKLVKNVQESDRRRVVDSLIWEASCRQRDPIHGPYGEYTKVYNEYRKVYDELN 107 7********************************************************************************************99 PP DUF260 96 llke 99 l+e XP_004505626.1 108 ILRE 111 9886 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50891 | 24.462 | 12 | 113 | IPR004883 | Lateral organ boundaries, LOB |
Pfam | PF03195 | 4.9E-35 | 13 | 110 | IPR004883 | Lateral organ boundaries, LOB |
Sequence ? help Back to Top |
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Protein Sequence Length: 202 aa Download sequence Send to blast |
MQTSNNNNGM HQACAACKHQ RKKCSENCIL APYFPSNRNC DFKAVHKVFG VSNITKLVKN 60 VQESDRRRVV DSLIWEASCR QRDPIHGPYG EYTKVYNEYR KVYDELNILR EHQNQLLQMP 120 PQGLRSVQDL IACNGTQSKS AAHNAINYLH SDHNMNASTI YNAYRANYLQ NIENVRTEVV 180 IPFQHQHSQP QAYYITGDGF NQ |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5ly0_A | 1e-21 | 3 | 120 | 1 | 123 | LOB family transfactor Ramosa2.1 |
5ly0_B | 1e-21 | 3 | 120 | 1 | 123 | LOB family transfactor Ramosa2.1 |
Search in ModeBase |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00128 | DAP | Transfer from AT1G06280 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_004505626.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_027191202.1 | 1e-145 | LOB domain-containing protein 2-like | ||||
TrEMBL | A0A3Q7YC80 | 1e-144 | A0A3Q7YC80_CICAR; LOB domain-containing protein 2-like | ||||
STRING | XP_004505626.1 | 1e-151 | (Cicer arietinum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF12722 | 25 | 34 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G06280.1 | 1e-38 | LOB domain-containing protein 2 |