PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Cicereae; Cicer

Family

MYB

Protein Properties

Length: 338aa MW: 38432.3 Da PI: 6.5108

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_004505589.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	60.7	3.2e-19	15	62	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT+eEd +lvd+++++G g+W++ ++ g++R++k+c++rw +yl XP_004505589.1 15 KGPWTPEEDRILVDYIEKHGHGSWRALPKLAGLNRCGKSCRLRWTNYL 62 79********************************************97 PP
2	Myb_DNA-binding	56.7	5.6e-18	68	113	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg++T+eE++ ++++++ lG++ W+tIa +++ gRt++++k++w+++l XP_004505589.1 68 RGKFTEEEEQSIINLHAVLGNK-WATIAGHLP-GRTDNEIKNFWNTHL 113 89******************.*****.**********996 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	2.6E-26	6	65	IPR009057	Homeodomain-like
PROSITE profile	PS51294	19.039	10	62	IPR017930	Myb domain
SuperFamily	SSF46689	2.75E-32	12	109	IPR009057	Homeodomain-like
SMART	SM00717	5.1E-16	14	64	IPR001005	SANT/Myb domain
Pfam	PF00249	1.4E-17	15	62	IPR001005	SANT/Myb domain
CDD	cd00167	1.13E-12	17	62	No hit	No description
PROSITE profile	PS51294	27.062	63	117	IPR017930	Myb domain
Gene3D	G3DSA:1.10.10.60	1.5E-27	66	117	IPR009057	Homeodomain-like
SMART	SM00717	5.4E-16	67	115	IPR001005	SANT/Myb domain
Pfam	PF00249	3.7E-16	68	113	IPR001005	SANT/Myb domain
CDD	cd00167	6.85E-12	70	113	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0009737	Biological Process	response to abscisic acid
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 338 aa Download sequence Send to blast
MMGRTPCCDE RGLKKGPWTP EEDRILVDYI EKHGHGSWRA LPKLAGLNRC GKSCRLRWTN 60 YLRPDIKRGK FTEEEEQSII NLHAVLGNKW ATIAGHLPGR TDNEIKNFWN THLKKKLLQM 120 GLDPVTHRPR IDHLNLMSNL QQILAANILN TTFPNTLDNA LRLQSDATQL AKLQLLQNIL 180 QIQILGANTP NTSNLELLNS FGNSSSPLQE SFLNELLGLN YQTKFQNVYD GYFPSQQNQT 240 NFQSFEAPPQ MQPPQKVDEL SFDHATNSSS TTTPLNSLPN LVSVSPECSA VKQIKENKRN 300 QNECSISNST TFEMLGDFMY EEVSDVYWKD LLDQESNQ

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1a5j_A	8e-30	13	117	5	108	B-MYB
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor that acts as negative regulator of lateral root (LR) development. Required for normal auxin responses during LR development. May be part of a negative feedback loop stimulated specifically in the endodermis upon LR initiation to ensure that LRs are formed only in the correct place. {ECO:0000269\|PubMed:24902892}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_004505589.1

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Induced by abscisic acid (ABA), auxin and gravity in roots. {ECO:0000269\|PubMed:24902892}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004505589.1	0.0	transcription factor MYB53-like
Swissprot	Q9S9Z2	6e-87	MYB93_ARATH; Transcription factor MYB93
TrEMBL	A0A1S3EA15	0.0	A0A1S3EA15_CICAR; transcription factor MYB53-like
STRING	XP_004505589.1	0.0	(Cicer arietinum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF402	34	172

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G16770.2	3e-91	myb domain protein 9

Publications ? help Back to Top
Gibbs DJ,Coates JC AtMYB93 is an endodermis-specific transcriptional regulator of lateral root development in arabidopsis. Plant Signal Behav, 2014. 9(10): p. e970406 [PMID:25482809]