PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_004505536.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Cicereae; Cicer
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Family | NAC | ||||||||
Protein Properties | Length: 292aa MW: 33042.1 Da PI: 8.1613 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 105.3 | 7.5e-33 | 53 | 193 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkklelee.......vikev.diykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratk......sg 81 lp+G++F+Ptd+e++ e+L++kv+++ ++l+ +++ +i++++P++Lp v+++ +fF++ +k+y+tg+rk+r+++ + XP_004505536.1 53 LPAGVKFDPTDQEIL-EHLEAKVRSDIHKLHPlidefipTLEGEnGICYTHPEKLP-GVSKDGLIRHFFHRPSKAYTTGTRKRRKVHsdedgsET 145 799***********9.99*****99984443333333222333336**********.555555677******************85545555577 PP NAM 82 yWkatgkdkevlskkgelvglkktLvfy..kgrapkgektdWvmheyrl 128 +W++tgk+++v++ +++l+g kk+Lv+y g+ +k+ekt+Wvmh+y+l XP_004505536.1 146 RWHKTGKTRPVYN-NSKLKGYKKILVLYtnYGKLRKPEKTNWVMHQYHL 193 8************.999***********6557999999*********98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 1.16E-36 | 49 | 212 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 32.884 | 53 | 212 | IPR003441 | NAC domain |
Pfam | PF02365 | 1.5E-15 | 54 | 193 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 292 aa Download sequence Send to blast |
MSEEMTLCSD IQNNDHSVTL EGRTDSLIRT CLTCGHHIKC QDQGGGINDL PGLPAGVKFD 60 PTDQEILEHL EAKVRSDIHK LHPLIDEFIP TLEGENGICY THPEKLPGVS KDGLIRHFFH 120 RPSKAYTTGT RKRRKVHSDE DGSETRWHKT GKTRPVYNNS KLKGYKKILV LYTNYGKLRK 180 PEKTNWVMHQ YHLGSNEEEK EGELVVSKVF YQTQPRQCGG GSLIKDSVSE KTIKGQNGNQ 240 VVINGKNSTN GFLDYYRSNF ISFDQGNQHR DTNAQVINHF PVLEGAPNFN IP |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional activator that plays a regulatory role in the development of secondary cell wall fibers (PubMed:18952777,PubMed:22133261). Involved in the regulation of cellulose and hemicellulose biosynthetic genes as well as of genes involved in lignin polymerization and signaling (PubMed:22133261). Is not a direct target of SND1 (PubMed:18952777). {ECO:0000269|PubMed:18952777, ECO:0000269|PubMed:22133261}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_004505536.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004505536.1 | 0.0 | NAC domain-containing protein 73 | ||||
Swissprot | O49459 | 1e-114 | NAC73_ARATH; NAC domain-containing protein 73 | ||||
TrEMBL | A0A1S2YJI2 | 0.0 | A0A1S2YJI2_CICAR; NAC domain-containing protein 73 | ||||
STRING | XP_004505536.1 | 0.0 | (Cicer arietinum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1228 | 34 | 108 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G28500.1 | 1e-117 | NAC domain containing protein 73 |
Publications ? help Back to Top | |||
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