PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_004505344.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Cicereae; Cicer
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Family | B3 | ||||||||
Protein Properties | Length: 177aa MW: 19553.5 Da PI: 7.8638 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 43.5 | 5.5e-14 | 80 | 140 | 37 | 97 |
EEEETTS-EEEEEE..EEETTE.EEE-TTHHHHHHHHT--TT-EEEEEE-SS.SEE..EEEEE CS B3 37 tledesgrsWevkliyrkksgr.yvltkGWkeFvkangLkegDfvvFkldgr.sefelvvkvf 97 t+ + +g+sW++ + ++++++ + t GW++F+k+n +k+gD +vF+l+++ ++ + v+++ XP_004505344.1 80 TVLNYHGKSWDMIY--NGQKKAkQFDTFGWRKFAKDNCVKVGDACVFELMESkEKIIFEVQIL 140 67899*********..554444456789********************998656555555555 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.40.330.10 | 1.1E-13 | 43 | 141 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 2.55E-14 | 43 | 141 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 8.37E-14 | 45 | 141 | No hit | No description |
SMART | SM01019 | 2.0E-7 | 47 | 143 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 6.8E-12 | 80 | 138 | IPR003340 | B3 DNA binding domain |
PROSITE profile | PS50863 | 11.237 | 80 | 143 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 177 aa Download sequence Send to blast |
MSSSESGRRV SSCRIVVENQ TASPPPSIPT TNMQRVGIKP LSGKPYFHAI ILKTHLSPRF 60 TLGPSSKICS KLPSGAAVPT VLNYHGKSWD MIYNGQKKAK QFDTFGWRKF AKDNCVKVGD 120 ACVFELMESK EKIIFEVQIL RGDFPCEFPG INESEEEPIV LSELIGTGES EAPFVID |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_004505344.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004505344.1 | 1e-129 | B3 domain-containing protein Os04g0386900-like isoform X1 | ||||
TrEMBL | A0A1S2YIM0 | 1e-128 | A0A1S2YIM0_CICAR; B3 domain-containing protein Os04g0386900-like isoform X1 | ||||
STRING | XP_004505344.1 | 1e-129 | (Cicer arietinum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF9722 | 26 | 40 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G42700.1 | 2e-07 | B3 family protein |