PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_004505337.1

Organism

Cicer arietinum

Taxonomic ID

3827

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Cicereae; Cicer

Family

LBD

Protein Properties

Length: 172aa MW: 18716 Da PI: 7.8931

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_004505337.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	146.9	5.5e-46	17	116	1	100
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaela 95 +CaaCk+lrr+Ca+dCv+apyfpa++p+kfanvhk+FGasnv k+l++lpe++r da+ss+vyeA+ar+rdPvyG+vg i++lqqq++ l+++la XP_004505337.1 17 PCAACKLLRRRCAQDCVFAPYFPADEPHKFANVHKVFGASNVNKMLQDLPEHQRGDAVSSMVYEANARVRDPVYGCVGAISSLQQQIDVLQTQLA 111 7********************************************************************************************** PP DUF260 96 llkee 100 ++++e XP_004505337.1 112 VAQAE 116 99976 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	26.861	16	117	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	1.4E-45	17	114	IPR004883	Lateral organ boundaries, LOB

Sequence ? help Back to Top
Protein Sequence Length: 172 aa Download sequence Send to blast
MKEVSGGGGR KQGAASPCAA CKLLRRRCAQ DCVFAPYFPA DEPHKFANVH KVFGASNVNK 60 MLQDLPEHQR GDAVSSMVYE ANARVRDPVY GCVGAISSLQ QQIDVLQTQL AVAQAEAVHL 120 RVRQTASFWN NSGHSPTYSG SPSSNKINDS QPKNIFDMDM VVDQAGYADS IW

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5ly0_A	5e-50	13	118	7	112	LOB family transfactor Ramosa2.1
5ly0_B	5e-50	13	118	7	112	LOB family transfactor Ramosa2.1
Search in ModeBase

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_004505337.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	BT090716	1e-113	BT090716.1 Soybean clone JCVI-FLGm-5M9 unknown mRNA.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004505337.1	1e-127	LOB domain-containing protein 4-like
Swissprot	Q9SHE9	5e-72	LBD4_ARATH; LOB domain-containing protein 4
TrEMBL	A0A1S2YJ33	1e-126	A0A1S2YJ33_CICAR; LOB domain-containing protein 4-like
STRING	XP_004505337.1	1e-127	(Cicer arietinum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF1334	34	105

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G31320.1	2e-74	LOB domain-containing protein 4