PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_004505102.1
Organism
Cicer arietinum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Cicereae; Cicer
Family NAC
Protein Properties Length: 322aa    MW: 36978.6 Da    PI: 6.7904
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_004505102.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM103.72.4e-32692091128
             NAM   1 lppGfrFhPtdeelvveyLkkkvegkk......lelee.vikev.diykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratk......sg 81 
                     lp+G++F+P+d+e++ ++L++k+  +       ++++  +++   +i++++P++Lp  v+++ +  +fF++ +k+y+tg+rk+r+++      + 
  XP_004505102.1  69 LPAGVKFDPNDQEIL-QHLEAKIMFDVpklhplIDEFIpTLEGEnGICYTHPEKLP-GVSKDGQIRHFFHRPSKAYTTGTRKRRKVQtdeegsET 161
                     799***********9.99****998885564332222222333336**********.555666777******************74445655577 PP

             NAM  82 yWkatgkdkevlskkgelvglkktLvfy..kgrapkgektdWvmheyrl 128
                     +W++tgk+++++  +g  +g kk+Lv+y   gr++k+ekt+Wvmh+y+l
  XP_004505102.1 162 RWHKTGKTRPIFI-SGVMKGFKKILVLYtnYGRQKKPEKTNWVMHQYHL 209
                     8************.999***********6658***************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019413.01E-3765228IPR003441NAC domain
PROSITE profilePS5100532.86669228IPR003441NAC domain
PfamPF023652.4E-1470209IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:2000652Biological Processregulation of secondary cell wall biogenesis
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 322 aa     Download sequence    Send to blast
MTWCNDSDDQ DRGIQLITST FIRRIVSNET DLVTHDTKLP TQIRTLTCPS CGHNIQFQDQ  60
GGINDLPGLP AGVKFDPNDQ EILQHLEAKI MFDVPKLHPL IDEFIPTLEG ENGICYTHPE  120
KLPGVSKDGQ IRHFFHRPSK AYTTGTRKRR KVQTDEEGSE TRWHKTGKTR PIFISGVMKG  180
FKKILVLYTN YGRQKKPEKT NWVMHQYHLG NNEEEKDGEL VVSKVFYQTQ PRQCGNSNSI  240
MKDTYENRMS ERNVQDDDNI VSKNVVPTMD YYNCDPFMNY EHVGHNLESS PQLISNLVMQ  300
GDDGSSFIRL AMDANKARLD RN
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that plays a regulatory role in the development of secondary cell wall fibers. Is a direct target of SND1. {ECO:0000269|PubMed:18952777}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00165DAPTransfer from AT1G28470Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_004505102.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004505102.10.0NAC domain-containing protein 10
SwissprotF4HY611e-123NAC10_ARATH; NAC domain-containing protein 10
TrEMBLA0A1S2YI070.0A0A1S2YI07_CICAR; NAC domain-containing protein 10
STRINGXP_004505101.10.0(Cicer arietinum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF122834108
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G28470.11e-125NAC domain containing protein 10