PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_004504999.1
Organism
Cicer arietinum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Cicereae; Cicer
Family MYB_related
Protein Properties Length: 468aa    MW: 53097.6 Da    PI: 9.8951
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_004504999.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding22.72.3e-07743237
                     SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT.TTS-H CS
  Myb_DNA-binding  2 grWTteEdellvdavkqlGggtWktIartmg.kgRtl 37
                     + W t+E++ll  av ++G+++W+ +a+++   ++++
   XP_004504999.1  7 MTWGTWEELLLGGAVLRHGTRNWTVVAAELRaRTLSP 43
                     57*****************************555555 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF002495.7E-6746IPR001005SANT/Myb domain
SuperFamilySSF473701.27E-19255367IPR001487Bromodomain
Gene3DG3DSA:1.20.920.103.4E-16256365IPR001487Bromodomain
SMARTSM002974.2E-17263367IPR001487Bromodomain
CDDcd043693.54E-14266362No hitNo description
PfamPF004396.8E-11271351IPR001487Bromodomain
PROSITE profilePS500149.601278348IPR001487Bromodomain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 468 aa     Download sequence    Send to blast
MGAEVMMTWG TWEELLLGGA VLRHGTRNWT VVAAELRART LSPYAITPEV CKAKYEDLQH  60
RYSGCTAWFE ELKKKRVAEL KRALEQSEDS IGSLESMLES LKADKNEKRD DCRVDNDSVG  120
LELQVPLQKS ERVESSTKEM SKDGLSAGSF THQSQTNWSH ECHIPAMSSE DMEIKPEGSG  180
SIEHEKVLNV DKLTHTLYET QGGSFKKRRG KRKRKDCGRK INEASVRESD FSFDASWFKE  240
SSTSNCGEVV KSSGITEENT KLKKDEMKDM MEILDSVLEI KGAFAFCRKH DSQKRARYRM  300
LIRRHMDFDA IRSRISNQTI NSVMELFRDM LLLANNALVF YSKNTRQYKY ALLLRDIVTQ  360
KLRENVKFFS RSVMHANVSN SIILPVHDSS LNVRSVRSGN RKIIVAEAAD GSNPAIAISN  420
GAKKPSSKED SPCSVKTLHI KKAFGGPKKL EPATPMKEMK EKTRRRTK
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1205210KKRRGK
2207215RRGKRKRKD
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_004504999.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004504999.10.0uncharacterized protein LOC101514166 isoform X1
TrEMBLA0A1S2YHS40.0A0A1S2YHS4_CICAR; uncharacterized protein LOC101514166 isoform X1
STRINGXP_004504999.10.0(Cicer arietinum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF63041723
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G42150.11e-28DNA-binding bromodomain-containing protein