PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_004504860.1
Organism
Cicer arietinum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Cicereae; Cicer
Family GATA
Protein Properties Length: 340aa    MW: 37899 Da    PI: 4.4952
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_004504860.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA45.88.5e-15177213135
            GATA   1 CsnCgttk..TplWRrgpdgnktLCnaCGlyyrkkgl 35 
                     C++Cg  +  Tp +Rrgp g+++LCnaCGl+++ kg+
  XP_004504860.1 177 CQHCGIGEksTPAMRRGPAGPRSLCNACGLMWANKGT 213
                     ****865556************************997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM009791.4E-73772IPR010399Tify domain
PROSITE profilePS5132013.4223772IPR010399Tify domain
PfamPF062001.8E-104171IPR010399Tify domain
PfamPF062035.7E-15108149IPR010402CCT domain
PROSITE profilePS5101712.759108150IPR010402CCT domain
SMARTSM004014.8E-13171224IPR000679Zinc finger, GATA-type
PROSITE profilePS501148.616171228IPR000679Zinc finger, GATA-type
SuperFamilySSF577161.09E-11173225No hitNo description
Gene3DG3DSA:3.30.50.101.5E-14175218IPR013088Zinc finger, NHR/GATA-type
CDDcd002025.66E-14176219No hitNo description
PROSITE patternPS003440177204IPR000679Zinc finger, GATA-type
PfamPF003209.0E-13177213IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 340 aa     Download sequence    Send to blast
MDTLNSCENE LMVVPMHCTN GASVSDEGGE ESQPIATTSR ASELTISFEG EVYVFPSVTP  60
QKVQAVLLLL GRQETPDSTP TSNFLVQQNC QDIWGINDPS RSSKLSRRIA SLVRFREKRK  120
ERCFEKKIRY TCRKEVAQRM HRKNGQFASL KEDYISPAEN QDSSNGTPCP ESTERRCQHC  180
GIGEKSTPAM RRGPAGPRSL CNACGLMWAN KGTLRDLSKA GRIAFEQNEL DTSTDIKPST  240
TEPGNSCTVQ DKEGSPQENK PVPIDVKQSP ETENEQYILE SAEAVTDNLS IQLENNVLDL  300
HEQDNTMEDF ADASGTEFEI PAGFDDQVDI DDSNMRTYWL
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. {ECO:0000250, ECO:0000269|PubMed:14966217}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_004504860.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004504860.10.0GATA transcription factor 19-like
SwissprotQ8H1G01e-62GAT28_ARATH; GATA transcription factor 28
TrEMBLA0A1S2YHF60.0A0A1S2YHF6_CICAR; GATA transcription factor 19-like
STRINGXP_004504860.10.0(Cicer arietinum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF33193364
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G51600.23e-54ZIM-LIKE 2