PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_004504766.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Cicereae; Cicer
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Family | NAC | ||||||||
Protein Properties | Length: 193aa MW: 22444.8 Da PI: 4.8069 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 112.7 | 3.9e-35 | 10 | 129 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk 95 lppGfrF Ptdeel+v++L++k++ +++ +vi+++d++ ++Pw+L+ ++ +e ++wy++s+r +nr+t++gyW g +++v+++ XP_004504766.1 10 LPPGFRFYPTDEELLVHFLHRKASLLPCHP-DVIPDLDLFPYDPWELHGRALEEGNQWYYYSRRT--------QNRITNNGYWMPMGMEEQVVTT 95 79*************************999.99**************977778899******984........589************9999987 PP NAM 96 .kgelvglkktLvfykgrapkgektdWvmheyrl 128 +++ g+kk vf+ g++p+g+kt+W+m+eyrl XP_004504766.1 96 sTNKRLGIKKYYVFHLGQTPNGNKTNWIMQEYRL 129 67788***************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 1.31E-46 | 7 | 161 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 44.767 | 10 | 162 | IPR003441 | NAC domain |
Pfam | PF02365 | 3.2E-21 | 11 | 129 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0010089 | Biological Process | xylem development | ||||
GO:0043067 | Biological Process | regulation of programmed cell death | ||||
GO:0048367 | Biological Process | shoot system development | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 193 aa Download sequence Send to blast |
MGDNNNNVNL PPGFRFYPTD EELLVHFLHR KASLLPCHPD VIPDLDLFPY DPWELHGRAL 60 EEGNQWYYYS RRTQNRITNN GYWMPMGMEE QVVTTSTNKR LGIKKYYVFH LGQTPNGNKT 120 NWIMQEYRLS DSASSSRSSS SKRKSQPKSE HSRWVICRVY ESDDDEDGDG TELSCLDEVF 180 LSLDDLDEVS LPN |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ut4_A | 1e-38 | 3 | 161 | 10 | 164 | NO APICAL MERISTEM PROTEIN |
1ut4_B | 1e-38 | 3 | 161 | 10 | 164 | NO APICAL MERISTEM PROTEIN |
1ut7_A | 1e-38 | 3 | 161 | 10 | 164 | NO APICAL MERISTEM PROTEIN |
1ut7_B | 1e-38 | 3 | 161 | 10 | 164 | NO APICAL MERISTEM PROTEIN |
3swm_A | 1e-38 | 3 | 161 | 13 | 167 | NAC domain-containing protein 19 |
3swm_B | 1e-38 | 3 | 161 | 13 | 167 | NAC domain-containing protein 19 |
3swm_C | 1e-38 | 3 | 161 | 13 | 167 | NAC domain-containing protein 19 |
3swm_D | 1e-38 | 3 | 161 | 13 | 167 | NAC domain-containing protein 19 |
3swp_A | 1e-38 | 3 | 161 | 13 | 167 | NAC domain-containing protein 19 |
3swp_B | 1e-38 | 3 | 161 | 13 | 167 | NAC domain-containing protein 19 |
3swp_C | 1e-38 | 3 | 161 | 13 | 167 | NAC domain-containing protein 19 |
3swp_D | 1e-38 | 3 | 161 | 13 | 167 | NAC domain-containing protein 19 |
4dul_A | 1e-38 | 3 | 161 | 10 | 164 | NAC domain-containing protein 19 |
4dul_B | 1e-38 | 3 | 161 | 10 | 164 | NAC domain-containing protein 19 |
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Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor that influences tracheary elements and xylem development by negatively regulating secondary cell wall fiber synthesis and programmed cell death. {ECO:0000269|PubMed:18069942, ECO:0000269|PubMed:20458494}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_004504766.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP010423 | 2e-64 | AP010423.1 Lotus japonicus genomic DNA, chromosome 4, clone: LjT16M14, TM1779, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004504766.1 | 1e-144 | NAC domain-containing protein 104 | ||||
Swissprot | Q8GWK6 | 7e-85 | NC104_ARATH; NAC domain-containing protein 104 | ||||
TrEMBL | A0A1S2YH74 | 1e-142 | A0A1S2YH74_CICAR; NAC domain-containing protein 104 | ||||
STRING | XP_004504766.1 | 1e-143 | (Cicer arietinum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1736 | 33 | 95 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G64530.1 | 7e-78 | xylem NAC domain 1 |
Publications ? help Back to Top | |||
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