PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_004504739.1

Organism

Cicer arietinum

Taxonomic ID

3827

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Cicereae; Cicer

Family

WRKY

Protein Properties

Length: 434aa MW: 48176.2 Da PI: 6.457

Description

WRKY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_004504739.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRKY	95.9	2.8e-30	191	250	1	59
---SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 1 ldDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 ++Dg++WrKYGqK kg+++pr+YYrCt a gCpv+k+v+r+ +d +++++tYeg+Hnh+ XP_004504739.1 191 MNDGCQWRKYGQKIAKGNPCPRAYYRCTVApGCPVRKQVQRCIDDMSILITTYEGTHNHP 250 58*************************99**************************7 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:2.20.25.80	1.8E-32	176	252	IPR003657	WRKY domain
SuperFamily	SSF118290	6.54E-28	184	252	IPR003657	WRKY domain
PROSITE profile	PS50811	29.207	186	252	IPR003657	WRKY domain
SMART	SM00774	2.7E-37	191	251	IPR003657	WRKY domain
Pfam	PF03106	2.1E-27	192	250	IPR003657	WRKY domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding
GO:0044212	Molecular Function	transcription regulatory region DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 434 aa Download sequence Send to blast
MDRGKEHKKM EVDLSLKIDS NDEQEVEEAK VDHEHVMKED DKEEVHETTA GEIEDDASII 60 QFSLQDNTKT KEDHQLSLSL QDNNASTSGE GPSRIHDMFS TKKIQRVSSL VPNNNTHDSI 120 SESELSLSLR LQTSTSQKDP EEKKEQLASF ESVQNKLQRV HDLPGIMNHV ASPPNRKARV 180 SVRARCETAT MNDGCQWRKY GQKIAKGNPC PRAYYRCTVA PGCPVRKQVQ RCIDDMSILI 240 TTYEGTHNHP LPVGATAMAS TASAAASFML LESSNPLISN GFTTQQQSFN PYYNTFHHPL 300 NPSSNIRSID PNDPSQGIVL DLTNNNNLNE PPRRFSTGSS SSNTTAFSWM PNKFQNSSSA 360 IAMNNNFQNP RVPLENINIW KGEENKTVDN NNNNNNVSAI ASDPKFRLAV AAAITSLMNK 420 DSHTTNGGQN GKHV

Sequence ? help Back to Top

Protein Sequence Length: 434 aa Download sequence Send to blast

MDRGKEHKKM EVDLSLKIDS NDEQEVEEAK VDHEHVMKED DKEEVHETTA GEIEDDASII  60
QFSLQDNTKT KEDHQLSLSL QDNNASTSGE GPSRIHDMFS TKKIQRVSSL VPNNNTHDSI  120
SESELSLSLR LQTSTSQKDP EEKKEQLASF ESVQNKLQRV HDLPGIMNHV ASPPNRKARV  180
SVRARCETAT MNDGCQWRKY GQKIAKGNPC PRAYYRCTVA PGCPVRKQVQ RCIDDMSILI  240
TTYEGTHNHP LPVGATAMAS TASAAASFML LESSNPLISN GFTTQQQSFN PYYNTFHHPL  300
NPSSNIRSID PNDPSQGIVL DLTNNNNLNE PPRRFSTGSS SSNTTAFSWM PNKFQNSSSA  360
IAMNNNFQNP RVPLENINIW KGEENKTVDN NNNNNNVSAI ASDPKFRLAV AAAITSLMNK  420
DSHTTNGGQN GKHV

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
2ayd_A	5e-22	178	254	1	76	WRKY transcription factor 1
Search in ModeBase

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_004504739.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004504739.1	0.0	probable WRKY transcription factor 9 isoform X2
TrEMBL	A0A1S2YH52	0.0	A0A1S2YH52_CICAR; probable WRKY transcription factor 9 isoform X2
STRING	XP_004504738.1	0.0	(Cicer arietinum)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G68150.1	5e-63	WRKY DNA-binding protein 9