PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_004504707.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Cicereae; Cicer
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Family | WRKY | ||||||||
Protein Properties | Length: 332aa MW: 37087.7 Da PI: 7.8925 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 106.7 | 1.2e-33 | 182 | 239 | 2 | 59 |
--SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 +Dgy+WrKYGqK vk+s++prsYYrCt+++C+vkk+vers edp++v++tYeg+Hnh+ XP_004504707.1 182 EDGYRWRKYGQKAVKNSPYPRSYYRCTTQKCTVKKRVERSFEDPTTVITTYEGQHNHP 239 8********************************************************7 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.20.25.80 | 4.4E-35 | 166 | 241 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 1.11E-29 | 173 | 241 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 32.983 | 176 | 241 | IPR003657 | WRKY domain |
SMART | SM00774 | 2.7E-39 | 181 | 240 | IPR003657 | WRKY domain |
Pfam | PF03106 | 4.8E-26 | 182 | 239 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 332 aa Download sequence Send to blast |
MSDEPKQANY QNFMVDHNIN YHQGNMYCEK QFSSFPNLAS SAYDSSQPTF DPSYMSFSEC 60 LQGGSMDHYN SSSLGNCFGV VSPSSSEVFS CVEGNTTNKK ASVATDQTLG ATLNSCISSS 120 SSEAGGGAAS EEDSGKRKHV IKEEGQESSK NEKKDKKKLG EKKKEKEPRF AFMTKSEVDQ 180 LEDGYRWRKY GQKAVKNSPY PRSYYRCTTQ KCTVKKRVER SFEDPTTVIT TYEGQHNHPV 240 PTSLRGNAAA AIMFTPSSLL STPSSNSNFS QDLLLHMHSH HNTFNITSQP SPHSNSNSSH 300 NNSLLHHYQH HRDYGLLQDI VPSMFLNRTN HS |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1wj2_A | 2e-29 | 171 | 241 | 7 | 77 | Probable WRKY transcription factor 4 |
2lex_A | 2e-29 | 171 | 241 | 7 | 77 | Probable WRKY transcription factor 4 |
Search in ModeBase |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00440 | DAP | Transfer from AT4G18170 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_004504707.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004504707.1 | 0.0 | WRKY transcription factor 71 | ||||
TrEMBL | A0A1S2YHX4 | 0.0 | A0A1S2YHX4_CICAR; WRKY transcription factor 71 | ||||
STRING | XP_004504707.1 | 0.0 | (Cicer arietinum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF2231 | 34 | 83 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G18170.1 | 9e-58 | WRKY DNA-binding protein 28 |