PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_004504554.1
Organism
Cicer arietinum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Cicereae; Cicer
Family TCP
Protein Properties Length: 469aa    MW: 52154.5 Da    PI: 7.0988
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_004504554.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP119.73.5e-37652282135
             TCP   2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgt........................ssssase 72 
                      g+kdrhsk+ T++g+RdRRvRls+++a++f+dLqd+LG+d++sk++eWL++ a  ai el+++                        +s +a e
  XP_004504554.1  65 SGGKDRHSKVMTSKGLRDRRVRLSVTTAIQFYDLQDRLGYDQPSKAVEWLIKSASDAISELPSLnntfpndddtnqllqpsseqqqglDSADA-E 158
                     689*************************************************************88787666666655554444443311111.1 PP

             TCP  73 c.eaesssssasnsssg.kaaksaa.kskksqksaasalnlak....esrakarararertrekmriknk 135
                     + e++++++ ++n++++ + + s+  +s+ s++s+ s l+l++     sr karararert++++ ++n+
  XP_004504554.1 159 MiENGENNNYHQNQNNQnNLCLSKSgCSSTSETSKGSGLSLSRcdirVSRVKARARARERTAKEKEKENN 228
                     13333333332222222544444444777777777777888777667888*********99988877755 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF036341.1E-4266225IPR005333Transcription factor, TCP
PROSITE profilePS5136931.02867125IPR017887Transcription factor TCP subgroup
PROSITE profilePS5137010.743205223IPR017888CYC/TB1, R domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009637Biological Processresponse to blue light
GO:0009965Biological Processleaf morphogenesis
GO:0030154Biological Processcell differentiation
GO:0045962Biological Processpositive regulation of development, heterochronic
GO:1903508Biological Processpositive regulation of nucleic acid-templated transcription
GO:2000306Biological Processpositive regulation of photomorphogenesis
Sequence ? help Back to Top
Protein Sequence    Length: 469 aa     Download sequence    Send to blast
MEEDEIQVQS QNQSCKFPRV GNNRNDQEED LEDGSMRRVG GCDGNTNRLN NWHHSSRIIR  60
VSRASGGKDR HSKVMTSKGL RDRRVRLSVT TAIQFYDLQD RLGYDQPSKA VEWLIKSASD  120
AISELPSLNN TFPNDDDTNQ LLQPSSEQQQ GLDSADAEMI ENGENNNYHQ NQNNQNNLCL  180
SKSGCSSTSE TSKGSGLSLS RCDIRVSRVK ARARARERTA KEKEKENNEC SHHHQQQQQH  240
QISQTASFTE LLTGGINNAV ANSPRGSSID EADLFNKARQ QQWNSAAPMD HYFNSVLLGP  300
SSSSSSRTHH QSLSQIQLGH SLHEQHHQSM SFSNNSGENQ NHQMQQQQQQ HQFSFIPDNN  360
DYNLNFKISS SLGLAGYNRG TLQSNSLSHL QRFSVSPIDH GSNVVVPFFM GGGGGGGASS  420
ATTASPSPSD ATPTMENNHQ IHHHHHQFSS VFDGSRLQLY SDHKGKPKN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5zkt_A9e-2472126155Putative transcription factor PCF6
5zkt_B9e-2472126155Putative transcription factor PCF6
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00006PBMTransfer from 493022Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_004504554.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004504554.10.0transcription factor TCP2-like
RefseqXP_004504555.10.0transcription factor TCP2-like
RefseqXP_004504556.10.0transcription factor TCP2-like
RefseqXP_027191536.10.0transcription factor TCP2-like
RefseqXP_027191537.10.0transcription factor TCP2-like
TrEMBLA0A1S2YHC40.0A0A1S2YHC4_CICAR; transcription factor TCP2-like
STRINGXP_004504554.10.0(Cicer arietinum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF40193156
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G18390.22e-48TEOSINTE BRANCHED 1, cycloidea and PCF transcription factor 2