PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_004504542.1
Organism
Cicer arietinum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Cicereae; Cicer
Family ARF
Protein Properties Length: 918aa    MW: 102817 Da    PI: 6.6454
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_004504542.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B373.42.7e-23126227199
                     EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSS CS
              B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrs 88 
                     f+k+lt sd++++g +++p++ ae+        +++++  ++l+ +d++g  W++k+i+r++++r++lt+GW+ Fv+a++L +gD+v+F   +++
  XP_004504542.1 126 FCKILTASDTSTHGGFSVPRRAAEKVfppldfsQQPPA--QELIARDLHGIDWKFKHIFRGQPKRHLLTTGWSVFVSAKRLVAGDSVLFI--WNE 216
                     99*****************************8544444..48************************************************..899 PP

                     EE..EEEEE-S CS
              B3  89 efelvvkvfrk 99 
                     + +++++++r+
  XP_004504542.1 217 KNQMLLGIRRA 227
                     9999****997 PP
2Auxin_resp1201.9e-39252335183
      Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalk.vkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 
                     aahaa+t+s F+++YnPras+seFv++++k++ka++ ++vsvGmRf+m fete+ss rr++Gt++g+sdld+vrWpnS+Wrs+k
  XP_004504542.1 252 AAHAAATNSRFTIFYNPRASPSEFVIPLAKYVKAVYhTRVSVGMRFRMLFETEESSVRRYMGTITGISDLDSVRWPNSHWRSVK 335
                     79*********************************9789******************************************985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019364.32E-47111255IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.108.6E-41117241IPR015300DNA-binding pseudobarrel domain
CDDcd100171.14E-20125226No hitNo description
PfamPF023628.4E-22126227IPR003340B3 DNA binding domain
SMARTSM010191.4E-23126228IPR003340B3 DNA binding domain
PROSITE profilePS5086312.746126228IPR003340B3 DNA binding domain
PfamPF065071.3E-34252335IPR010525Auxin response factor
PfamPF023091.1E-6781870IPR033389AUX/IAA domain
SuperFamilySSF542772.29E-6781860No hitNo description
PROSITE profilePS5174522.454785869IPR000270PB1 domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009725Biological Processresponse to hormone
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 918 aa     Download sequence    Send to blast
MKFSSAGFSP PPPEGEKRVL DSELWHACAG PLVSLPAVGS RVVYFPQGHS EQVAVSTNRE  60
VDTYIPNPSL PPQLICQLHN LTMHADTETD EVYAQMTLQP LNPEEQKEAY LPAELGAASK  120
QPTNYFCKIL TASDTSTHGG FSVPRRAAEK VFPPLDFSQQ PPAQELIARD LHGIDWKFKH  180
IFRGQPKRHL LTTGWSVFVS AKRLVAGDSV LFIWNEKNQM LLGIRRANRP QPMMPSSVLS  240
SDSMHLGLLA AAAHAAATNS RFTIFYNPRA SPSEFVIPLA KYVKAVYHTR VSVGMRFRML  300
FETEESSVRR YMGTITGISD LDSVRWPNSH WRSVKVGWDE STAGERQPRV SLWEIEPLTT  360
FPMYPSPFPL RLKRPWPPGL PSFHAGLKDD DFGMNSPLLW LRDTDRGLQT LNFQGIGVNP  420
WMQPRLDPSM MHLQPDMYQA MAAAALQDMR TFDPSKQQHP GSLLQFQQPQ NFTNGTATLM  480
QNQMLQQSQP QQAFPKNQEN QHPSQSQSQP QTQSHFQQLL QHQHSFTNQN HHHLQQQQQQ  540
QQQQQQQQQQ QKSQQQQQVV DHQQISSAVS TMSQFVSTPQ SQPTQPMQAI SSIGNQQNFT  600
DSNGNHVTTS IVSPLHNMLG SFPNDETSHL LNLPRQNSWV PVQSSTAWPS KRVAVDPLLS  660
SGGTNYVLPQ VEQLGQSQTT MSQNAVILPP FPGRECAIEG STDPQNHLLF GFNIEPSSHL  720
VYNEMPNLKR VNSNCDSSTA PFQSSTYLNT AGADSSLNPG MTHGIGESDF LQTPENGGQG  780
NQPNRTFVKV YKSGSFGRSL DITKFSNYHE LRSELARMFG LERELEDPVR SGWQLVFVDQ  840
ENDVLLLGDG PWPEFVNSVW CIKILSPQEV QQMGNNGLEL LNSAQNQRHS NGICDDYTGR  900
EDSRNLSTGL ATVGSLDY
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldu_A1e-1551635647388Auxin response factor 5
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtAuxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs).
UniProtAuxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs).
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_004504542.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004504542.10.0auxin response factor 6 isoform X1
SwissprotA2X1A10.0ARFF_ORYSI; Auxin response factor 6
SwissprotQ6H6V40.0ARFF_ORYSJ; Auxin response factor 6
TrEMBLA0A1S2YHA90.0A0A1S2YHA9_CICAR; Auxin response factor
STRINGXP_004504542.10.0(Cicer arietinum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF17653488
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G30330.10.0auxin response factor 6
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]