PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_004504539.1

Organism

Cicer arietinum

Taxonomic ID

3827

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Cicereae; Cicer

Family

M-type_MADS

Protein Properties

Length: 178aa MW: 20243.3 Da PI: 10.1643

Description

M-type_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_004504539.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	70.2	1.8e-22	12	57	4	49
-SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS SRF-TF 4 enksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49 ++ rqvtfskRr+g++KKA+ELS+LC+aeva+++fs+ +k y + XP_004504539.1 12 KDPNTRQVTFSKRRTGLFKKANELSILCGAEVAIVVFSPGNKPYSF 57 67778**********************************9998877 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF55455	1.57E-27	1	72	IPR002100	Transcription factor, MADS-box
SMART	SM00432	2.6E-35	1	60	IPR002100	Transcription factor, MADS-box
PROSITE profile	PS50066	26.983	1	61	IPR002100	Transcription factor, MADS-box
CDD	cd00120	2.56E-30	2	60	No hit	No description
PRINTS	PR00404	1.5E-20	3	23	IPR002100	Transcription factor, MADS-box
Pfam	PF00319	1.0E-25	11	57	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	1.5E-20	23	38	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	1.5E-20	38	59	IPR002100	Transcription factor, MADS-box

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 178 aa Download sequence Send to blast
MGRRKIEIEM VKDPNTRQVT FSKRRTGLFK KANELSILCG AEVAIVVFSP GNKPYSFGHP 60 GVDVVAAKFL QQDSKPIDSH GNPSSDSSNM EKLNLELAEV LAQIREGEKH SEAQDQILKQ 120 HNISKLQLQD LRDSYQILQD RIKLRLSDIE ISEYMMLLSQ DPVVGIKTKS LKKKRRRN

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6byy_A	1e-18	1	83	1	82	MEF2 CHIMERA
6byy_B	1e-18	1	83	1	82	MEF2 CHIMERA
6byy_C	1e-18	1	83	1	82	MEF2 CHIMERA
6byy_D	1e-18	1	83	1	82	MEF2 CHIMERA
6bz1_A	2e-18	1	83	1	82	MEF2 CHIMERA
6bz1_B	2e-18	1	83	1	82	MEF2 CHIMERA
6bz1_C	2e-18	1	83	1	82	MEF2 CHIMERA
6bz1_D	2e-18	1	83	1	82	MEF2 CHIMERA
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Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	171	176	KKKRRR

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_004504539.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004504539.1	1e-128	agamous-like MADS-box protein AGL29
Swissprot	O64703	1e-38	AGL29_ARATH; Agamous-like MADS-box protein AGL29
TrEMBL	A0A1S2YGN5	1e-127	A0A1S2YGN5_CICAR; agamous-like MADS-box protein AGL29
STRING	XP_004504539.1	1e-128	(Cicer arietinum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF2424	29	79

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G34440.1	5e-41	AGAMOUS-like 29

Publications ? help Back to Top
Zhang S, et al. FERTILIZATION-INDEPENDENT SEED-Polycomb Repressive Complex 2 Plays a Dual Role in Regulating Type I MADS-Box Genes in Early Endosperm Development. Plant Physiol., 2018. 177(1): p. 285-299 [PMID:29523711]