 |
Plant Transcription
Factor Database
|
Transcription Factor Information
|
Basic
Information? help
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| TF ID |
XP_004504111.1 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Cicereae; Cicer
|
| Family |
HD-ZIP |
| Protein Properties |
Length: 305aa MW: 34816.4 Da PI: 4.3473 |
| Description |
HD-ZIP family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| XP_004504111.1 | genome | NCBI | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | Homeobox | 59.4 | 5.9e-19 | 58 | 111 | 3 | 56 |
--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
Homeobox 3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56
k+++++ +q+++Le+ Fe ++++ +++ +LA++lgL+ rqV vWFqNrRa++k
XP_004504111.1 58 KKRRLSVDQVKALEKNFEVENKLEPDRKVKLAQELGLQPRQVAVWFQNRRARWK 111
566899***********************************************9 PP
|
| 2 | HD-ZIP_I/II | 129.1 | 1.8e-41 | 57 | 149 | 1 | 93 |
HD-ZIP_I/II 1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelke 93
ekkrrls +qvk+LE++Fe e+kLep+rKv+la+eLglqprqvavWFqnrRAR+ktkqlE+dy Lk++ydalk + ++L++++e+L +e+ke
XP_004504111.1 57 EKKRRLSVDQVKALEKNFEVENKLEPDRKVKLAQELGLQPRQVAVWFQNRRARWKTKQLERDYGLLKANYDALKLNYDNLQRDNETLLKEVKE 149
69**************************************************************************************99987 PP
|
| Gene Ontology ? help Back to Top |
| GO Term |
GO Category |
GO Description |
| GO:0009414 | Biological Process | response to water deprivation |
| GO:0009788 | Biological Process | negative regulation of abscisic acid-activated signaling pathway |
| GO:0045893 | Biological Process | positive regulation of transcription, DNA-templated |
| GO:0005634 | Cellular Component | nucleus |
| GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
| GO:0043565 | Molecular Function | sequence-specific DNA binding |
| Sequence ? help Back to Top |
| Protein Sequence Length: 305 aa
Download sequence Send
to blast |
MKRLGSSDSL GALMTICPPT EEQISPRNNH VYGREFQSML EGLDEEGCVE EPLHHSEKKR 60
RLSVDQVKAL EKNFEVENKL EPDRKVKLAQ ELGLQPRQVA VWFQNRRARW KTKQLERDYG 120
LLKANYDALK LNYDNLQRDN ETLLKEVKEL KSRMQIEEEN TSTESDVSVK EELITLQDST 180
TTPTCDETAI PESDSKDLNY ECFKNSDGVA SLFPADFKDG SSDSDSSAIL NEDNNNSPNA 240
AISSSGVLQN HNFLMSSSQS SMSCFQFQKY VKMEEQNFLG GDETCDFFSD EQPPTLQWYC 300
SDDWN
|
| Nucleic Localization
Signal ? help
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 |
| No. |
Start |
End |
Sequence |
| 1 | 105 | 113 | RRARWKTKQ |
| Functional Description ? help
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| Source |
Description |
| UniProt | Transcription activator that may act as growth regulators in response to water deficit. Interacts with the core sequence 5'-CAATTATTA-3' of promoters in response to ABA and in an ABI1-dependent manner. Involved in the negative regulation of the ABA signaling pathway. {ECO:0000269|PubMed:10527431, ECO:0000269|PubMed:12065416}. |
| Regulation -- Description ? help
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| Source |
Description |
| UniProt | INDUCTION: By water deficit, by abscisic acid (ABA) and by salt stress. Self expression regulation. {ECO:0000269|PubMed:10527431, ECO:0000269|PubMed:12065416, ECO:0000269|PubMed:16055682}. |
| Annotation --
Nucleotide ? help
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| Source |
Hit ID |
E-value |
Description |
| GenBank | KP015498 | 5e-94 | KP015498.1 Vicia sativa subsp. sativa SSR marker NAC-VSspS-11 mRNA sequence. |
| GenBank | KP015622 | 5e-94 | KP015622.1 Vicia sativa subsp. sativa SSR marker NAC-VSspS-174 mRNA sequence. |
