PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_004503784.1
Organism
Cicer arietinum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Cicereae; Cicer
Family BBR-BPC
Protein Properties Length: 308aa    MW: 34625.3 Da    PI: 9.8162
Description BBR-BPC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_004503784.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GAGA_bind329.11.3e-10013081301
       GAGA_bind   1 mdddgsre..rnkg.yye...............paaslkenlglqlmssiaerdaki..rernlalsekkaavaerdmaflqrdkalaernkalv 75 
                     m+dd ++e  r+k  yy+               ++++l   +++++ s++aer+a+i   e ++a+sek++a+a+rd a+ qrd+ala+r+ al+
  XP_004503784.1   1 MNDDREYEngRHKMeYYRgahslwntdpqhqvkEQNALV--MNKKIRSIMAERQAAIleLELEAAISEKNEALAARDAALRQRDEALAQRDSALL 93 
                     667766666899988999999999999766553224555..999*************77677889****************************** PP

       GAGA_bind  76 erdnkllalllvenslasalpvgvqvlsgtksidslqqlsepqledsavelreeeklealpieeaaeeakekkkkkkrqrakkpkekkakkkkkk 170
                     erdn+l+al+ ++ns++           g+k ++++ + + +++++ a++ ++  + +a p++  ++ea +++  k  +++ ++ +k  +k+kk 
  XP_004503784.1  94 ERDNALAALQSRSNSVN------FPFNGGSKRMHHSSN-HLSDMTEAAYGSKDIIIRDASPVTVITSEAVKSHLAK--RSKGNKVSKPPTKVKKM 179
                     ***********999843......334567777876666.5689*******999999*****999888888887777..44444455566789998 PP

       GAGA_bind 171 sekskkkvkkesaderskaekksidlvlngvslDestlPvPvCsCtGalrqCYkWGnGGWqSaCCtttiSvyPLPvstkrrgaRiagrKmSqgaf 265
                     +e+ ++k  +e+  ++ k+e++ +d++ln v++De+ +PvPvC+CtG++rqCYkWGnGGWqS+CCttt+S+yPLP+ +++r+aRi+grKmS+++f
  XP_004503784.1 180 GEDLNRKAYSEG--TKIKSEWDRQDVGLNLVAFDETIMPVPVCTCTGVPRQCYKWGNGGWQSSCCTTTLSMYPLPQLPNKRHARIGGRKMSGSVF 272
                     999999988888..57******************************************************************************* PP

       GAGA_bind 266 kklLekLaaeGydlsnpvDLkdhWAkHGtnkfvtir 301
                     ++lL++La+eG+d+s p+DLk++WA+HGtn+++ti+
  XP_004503784.1 273 TRLLSRLASEGHDVSIPLDLKEYWARHGTNRYITIK 308
                     ***********************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM012261.7E-1331308IPR010409GAGA-binding transcriptional activator
PfamPF062172.6E-9513308IPR010409GAGA-binding transcriptional activator
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009723Biological Processresponse to ethylene
GO:0050793Biological Processregulation of developmental process
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0042803Molecular Functionprotein homodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 308 aa     Download sequence    Send to blast
MNDDREYENG RHKMEYYRGA HSLWNTDPQH QVKEQNALVM NKKIRSIMAE RQAAILELEL  60
EAAISEKNEA LAARDAALRQ RDEALAQRDS ALLERDNALA ALQSRSNSVN FPFNGGSKRM  120
HHSSNHLSDM TEAAYGSKDI IIRDASPVTV ITSEAVKSHL AKRSKGNKVS KPPTKVKKMG  180
EDLNRKAYSE GTKIKSEWDR QDVGLNLVAF DETIMPVPVC TCTGVPRQCY KWGNGGWQSS  240
CCTTTLSMYP LPQLPNKRHA RIGGRKMSGS VFTRLLSRLA SEGHDVSIPL DLKEYWARHG  300
TNRYITIK
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that specifically binds to GA-rich elements (GAGA-repeats) present in regulatory sequences of genes involved in developmental processes. {ECO:0000269|PubMed:14731261}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_004503784.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004503784.10.0protein BASIC PENTACYSTEINE4-like
RefseqXP_004503785.10.0protein BASIC PENTACYSTEINE4-like
RefseqXP_027191991.10.0protein BASIC PENTACYSTEINE4-like
SwissprotQ8S8C61e-127BPC4_ARATH; Protein BASIC PENTACYSTEINE4
TrEMBLA0A1S2YEV70.0A0A1S2YEV7_CICAR; protein BASIC PENTACYSTEINE4-like
STRINGXP_004503784.10.0(Cicer arietinum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF69743348
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G21240.21e-111basic pentacysteine 4