PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_004503743.1
Organism
Cicer arietinum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Cicereae; Cicer
Family SBP
Protein Properties Length: 399aa    MW: 44524.8 Da    PI: 7.6862
Description SBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_004503743.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SBP131.14e-41105181278
                     -SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S--- CS
             SBP   2 CqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkqa 78 
                     C v+gC+adls++++yhrrhkvCe hsk+++v++ g++qrfCqqCsrfh+l+efDe+krsCr+rL++hn+rrrk+qa
  XP_004503743.1 105 CLVDGCQADLSNCRDYHRRHKVCELHSKTAQVTIGGHKQRFCQQCSRFHSLEEFDEGKRSCRKRLDGHNRRRRKPQA 181
                     **************************************************************************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1100.102.7E-3398166IPR004333Transcription factor, SBP-box
PROSITE profilePS5114131.787102179IPR004333Transcription factor, SBP-box
SuperFamilySSF1036122.09E-38103184IPR004333Transcription factor, SBP-box
PfamPF031102.3E-30105178IPR004333Transcription factor, SBP-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0048653Biological Processanther development
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 399 aa     Download sequence    Send to blast
MDWNLKAPSW ELSEVDHEAS LNNSNIETMN DGSTRSTSFE VYRTTKGEFS VDLKLGQVGH  60
SGTESMVTKS KDDVVGITKM TSSSSSSGSS KRARAINNGT QIVACLVDGC QADLSNCRDY  120
HRRHKVCELH SKTAQVTIGG HKQRFCQQCS RFHSLEEFDE GKRSCRKRLD GHNRRRRKPQ  180
AEPITRSSSF LSNYQGTQLL PFSSSHIYPS TAMMNPTWNG GDVRLHNHNQ HRQDLFLGTS  240
QTNTYKEGKQ VASFIQTNHH HPTTTLNNTN QHLPEASSLN QTFRRTNPFS DKMFCDSLTS  300
SVHNNNNNTS CALSLLSSPT QQQQTHDHVN GLNQMVNTHS SFMQPLGLSL HDHSLDPVLG  360
SNDESGHCSS IYNMGGSNES HSTQGNNNDA PPLFPFQWD
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ul4_A4e-281051781184squamosa promoter binding protein-like 4
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1161178KRSCRKRLDGHNRRRRKP
Functional Description ? help Back to Top
Source Description
UniProtTrans-acting factor that binds specifically to the consensus nucleotide sequence 5'-TNCGTACAA-3'. {ECO:0000250}.
UniProtTrans-acting factor that binds specifically to the consensus nucleotide sequence 5'-TNCGTACAA-3'. {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00555DAPTransfer from AT5G50570Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_004503743.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Negatively regulated by microRNAs miR156 and miR157. {ECO:0000305|PubMed:12202040}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004503743.10.0squamosa promoter-binding-like protein 13A
SwissprotB9DI207e-67SP13A_ARATH; Squamosa promoter-binding-like protein 13A
SwissprotP0DI117e-67SP13B_ARATH; Squamosa promoter-binding-like protein 13B
TrEMBLA0A1S2YFW50.0A0A1S2YFW5_CICAR; squamosa promoter-binding-like protein 13A
STRINGXP_004503742.10.0(Cicer arietinum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF25913378
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G50670.14e-68SBP family protein
Publications ? help Back to Top
  1. Jorgensen SA,Preston JC
    Differential SPL gene expression patterns reveal candidate genes underlying flowering time and architectural differences in Mimulus and Arabidopsis.
    Mol. Phylogenet. Evol., 2014. 73: p. 129-39
    [PMID:24508602]
  2. Xu M, et al.
    Developmental Functions of miR156-Regulated SQUAMOSA PROMOTER BINDING PROTEIN-LIKE (SPL) Genes in Arabidopsis thaliana.
    PLoS Genet., 2016. 12(8): p. e1006263
    [PMID:27541584]