PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Cicereae; Cicer

Family

M-type_MADS

Protein Properties

Length: 236aa MW: 27232.6 Da PI: 10.1967

Description

M-type_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_004503191.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	54.4	1.6e-17	10	50	2	42
---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-T CS SRF-TF 2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifss 42 +i n+s r+ tf kR++g++KK +ELS+LC+++++ ii+s+ XP_004503191.1 10 FIINDSARKATFKKRKKGLMKKVSELSTLCGIDACAIIYSP 50 789*************************************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50066	16.61	1	49	IPR002100	Transcription factor, MADS-box
SMART	SM00432	1.4E-23	1	60	IPR002100	Transcription factor, MADS-box
CDD	cd00266	1.98E-23	2	85	No hit	No description
SuperFamily	SSF55455	2.22E-24	2	95	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	1.0E-7	3	23	IPR002100	Transcription factor, MADS-box
Pfam	PF00319	2.9E-18	10	51	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	1.0E-7	23	38	IPR002100	Transcription factor, MADS-box

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0043078	Cellular Component	polar nucleus
GO:0003677	Molecular Function	DNA binding
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 236 aa Download sequence Send to blast
MTRKKVKLAF IINDSARKAT FKKRKKGLMK KVSELSTLCG IDACAIIYSP YDPQPEVWPA 60 PLGVQKVLSK FRRMPELEQS KKMVNQESFL RQRIQKAKEH LTKQRKDNRE KEMTQLMFQY 120 LSADKVMHNI NMVDLNDMAW MIDQYLKDIN RRVEVLTKNA QGQPQMVAPQ VVTNVVAKVE 180 DNNGQGSHGH VLDMNLDVMQ KQNWFMNLMN NGGGDEAPPM GDVNHQNGFW PSPFFH

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	2	24	RKKVKLAFIINDSARKATFKKRK
2	21	25	KKRKK

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor. Controls central cell differentiation during female gametophyte development. Required for the expression of DEMETER and DD46, but not for the expression of FIS2 (PubMed:16798889). Probable transcription factor that may function in the maintenance of the proper function of the central cell in pollen tube attraction (Probable). {ECO:0000269\|PubMed:16798889, ECO:0000305\|PubMed:26462908}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00553	DAP	Transfer from AT5G48670	Download

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_004503191.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AC148818	1e-174	AC148818.15 Medicago truncatula clone mth2-39c7, complete sequence.
GenBank	CT009535	1e-174	CT009535.6 M.truncatula DNA sequence from clone MTH2-68D12 on chromosome 3, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004503191.2	1e-178	agamous-like MADS-box protein AGL80
Swissprot	Q9FJK3	1e-67	AGL80_ARATH; Agamous-like MADS-box protein AGL80
TrEMBL	A0A1S2YEQ5	1e-176	A0A1S2YEQ5_CICAR; agamous-like MADS-box protein AGL80
STRING	XP_004503191.1	1e-177	(Cicer arietinum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF452	33	154

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G48670.1	5e-70	AGAMOUS-like 80

Publications ? help Back to Top
Zhang S, et al. FERTILIZATION-INDEPENDENT SEED-Polycomb Repressive Complex 2 Plays a Dual Role in Regulating Type I MADS-Box Genes in Early Endosperm Development. Plant Physiol., 2018. 177(1): p. 285-299 [PMID:29523711]