PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_004502989.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Cicereae; Cicer
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Family | NAC | ||||||||
Protein Properties | Length: 289aa MW: 33309.6 Da PI: 6.7171 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 169 | 1.5e-52 | 7 | 131 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk 95 lppGfrFhPtdeelv++yL++k++g+++++ v+ke+d+yk++Pw+Lp+ ++ekewyfFs+rd+ky++g+r+nra+ sgyWkatg dk++ + XP_004502989.1 7 LPPGFRFHPTDEELVNHYLCRKCAGQSISV-PVVKEIDLYKFDPWQLPEIGFQSEKEWYFFSPRDRKYPNGSRPNRAAGSGYWKATGADKPIGK- 99 79****************************.89***************64445689************************************98. PP NAM 96 kgelvglkktLvfykgrapkgektdWvmheyrl 128 +++g+kk Lvfy g+apkg+kt+W+mheyrl XP_004502989.1 100 -PKAMGIKKALVFYAGKAPKGVKTNWIMHEYRL 131 .778***************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 1.96E-61 | 3 | 157 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 60.035 | 7 | 157 | IPR003441 | NAC domain |
Pfam | PF02365 | 2.6E-28 | 8 | 131 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 289 aa Download sequence Send to blast |
MKGELELPPG FRFHPTDEEL VNHYLCRKCA GQSISVPVVK EIDLYKFDPW QLPEIGFQSE 60 KEWYFFSPRD RKYPNGSRPN RAAGSGYWKA TGADKPIGKP KAMGIKKALV FYAGKAPKGV 120 KTNWIMHEYR LANVDRSAGK KNNLRLDDWV LCRIYNKKGK IEKYNTVTPK VDSFYDHEEH 180 ERKPEIDKLG NYQLYMDSSD SIPRLHTDSC SSGHVVSPDV TCDKEVQSEV KWNEFGLQLD 240 DAFDFELNSL LDTSNLSLDL DGPFGTNFEY QMNHLSPLQD MFMYPNKPF |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
3ulx_A | 1e-80 | 2 | 163 | 10 | 174 | Stress-induced transcription factor NAC1 |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_004502989.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004502989.1 | 0.0 | NAC domain-containing protein 2 | ||||
Swissprot | Q39013 | 1e-117 | NAC2_ARATH; NAC domain-containing protein 2 | ||||
TrEMBL | A0A1S2YCW4 | 0.0 | A0A1S2YCW4_CICAR; NAC domain-containing protein 2 | ||||
STRING | XP_004502989.1 | 0.0 | (Cicer arietinum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1258 | 34 | 108 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G01720.1 | 1e-116 | NAC family protein |