PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | XP_004502779.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Cicereae; Cicer
|
||||||||
Family | NAC | ||||||||
Protein Properties | Length: 612aa MW: 68587.9 Da PI: 5.0876 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 167.1 | 6.2e-52 | 23 | 149 | 1 | 127 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp..kkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevl 93 lp GfrF+Ptdeel+++yL++k++g+ e+ vi+e+d++k+ePwd+p + +++++ ew+fF+++d+ky++g+r nrat++gyWkatgkd++++ XP_004502779.1 23 LPLGFRFRPTDEELIDYYLRQKINGNGDEV-WVIREIDVCKWEPWDMPdlSVIRNKDPEWFFFCPQDRKYPNGHRLNRATTHGYWKATGKDRKIK 116 699************************999.89**************96447777888************************************* PP NAM 94 skkgelvglkktLvfykgrapkgektdWvmheyr 127 s ++ l+g+kktLvfy+grapkg++t+Wvmheyr XP_004502779.1 117 S-GTILIGMKKTLVFYSGRAPKGKRTNWVMHEYR 149 *.99*****************************8 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 9.29E-61 | 15 | 173 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 55.624 | 23 | 173 | IPR003441 | NAC domain |
Pfam | PF02365 | 7.1E-28 | 24 | 149 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 612 aa Download sequence Send to blast |
MGSIDCGPSL GDDGMAVLSL NSLPLGFRFR PTDEELIDYY LRQKINGNGD EVWVIREIDV 60 CKWEPWDMPD LSVIRNKDPE WFFFCPQDRK YPNGHRLNRA TTHGYWKATG KDRKIKSGTI 120 LIGMKKTLVF YSGRAPKGKR TNWVMHEYRP TLKELDGTNP GQNAYVLCRL FKKNDESLEV 180 SNCGEVEQTT SAPMAANYSP EEIQSDAAPI AVSTSQVTED DKHQNVIPEI SEETISNVIA 240 SVDCHSDGYD AHDIQNKLAE LAAQEDQMNF DIYYNPKEGL LDDRLFSPAL VHMPQEFHYE 300 ANNESDGGCG LQYGTNEINI SDFLNSDLNW DQLPYVESGC HQQIFSLFNV KENGSGSDSD 360 VEVANMTCMP TTYPEEAIDR RIPCVTAPES RSTFDCSGDD DRKSKVVLLQ NNFQMAYPSD 420 GNIGEVYNVV NGNIGEVYNV INGYEQPRNY NTVISGENGI VRRARPAQDE QWKTFSMQGT 480 AQRRLRLKKI EDCSNVTVKD GSCTQEQHNS KPIIPVKKEA AESRAADESA TCTHASKQQK 540 VSLKSIYNIK ISRRVTSAGS ILGLRDFLLL AKAPFRSKAS PKCTLWSSVF VVSASVLVSL 600 AVFTNIWGYI KI |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
3ulx_A | 2e-44 | 22 | 176 | 14 | 171 | Stress-induced transcription factor NAC1 |
Search in ModeBase |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | XP_004502779.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | AC119415 | 5e-99 | AC119415.13 Medicago truncatula clone mth2-27n2, complete sequence. | |||
GenBank | AC126789 | 5e-99 | AC126789.20 Medicago truncatula clone mth2-36n23, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_004502779.1 | 0.0 | uncharacterized protein NAC41 | ||||
TrEMBL | A0A1S2YCD9 | 0.0 | A0A1S2YCD9_CICAR; uncharacterized protein NAC41 | ||||
STRING | XP_004502779.1 | 0.0 | (Cicer arietinum) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF5551 | 33 | 53 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT4G35580.1 | 5e-90 | NAC transcription factor-like 9 |