PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_004502612.1
Organism
Cicer arietinum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Cicereae; Cicer
Family WRKY
Protein Properties Length: 313aa    MW: 35446.5 Da    PI: 6.5137
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_004502612.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY91.66.2e-29130191159
                     ---SS-EEEEEEE--TT-SS-EEEEEE-ST...T---EEEEEE-SSSTTEEEEEEES--SS- CS
            WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsa...gCpvkkkversaedpkvveitYegeHnhe 59 
                     ldDgy+WrKYGqKe+ g+ +pr+YYrC+++   gC ++k+v+rs+ed +v+eitY+g+H+++
  XP_004502612.1 130 LDDGYSWRKYGQKEILGALHPRGYYRCSHRnveGCLATKQVQRSDEDSTVFEITYRGNHTCT 191
                     59***************************99999**************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5081122.733125193IPR003657WRKY domain
Gene3DG3DSA:2.20.25.802.3E-28126191IPR003657WRKY domain
SuperFamilySSF1182902.75E-25128192IPR003657WRKY domain
SMARTSM007743.8E-40130192IPR003657WRKY domain
PfamPF031067.7E-27131190IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 313 aa     Download sequence    Send to blast
MGDSKSLIHE LLQGLELTRQ LQLYLNVPSS SSNETRELLI QQIITTFEKA LQMVNRKGHV  60
AESSQQQQPA RTVGIRMLDS PPLSCSPKSE DSDRDFQDHH RNAFKKRNTM PIRWTKKIRV  120
TPGVRVEGPL DDGYSWRKYG QKEILGALHP RGYYRCSHRN VEGCLATKQV QRSDEDSTVF  180
EITYRGNHTC TMESNVVALP TLNPNENQET NVNTNLQSMR TGLRVQTENL DFLDQPFGSI  240
FSSPAVLESS FVENFNSPSA NSGISQFSMS PNSSVFPNIT TSVANTPTTS LEFPIDQFEF  300
DRHNFTFDNS PFF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6ir8_A3e-19130190868OsWRKY45
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_004502612.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004502612.10.0probable WRKY transcription factor 53
TrEMBLA0A1S2YC260.0A0A1S2YC26_CICAR; probable WRKY transcription factor 53
STRINGXP_004502612.10.0(Cicer arietinum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF49334157
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G23810.11e-48WRKY family protein