PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_004502570.1
Organism
Cicer arietinum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Cicereae; Cicer
Family MYB
Protein Properties Length: 291aa    MW: 33600.4 Da    PI: 9.5743
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_004502570.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding57.33.6e-181661147
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47
                     rg W + Ede+l ++v+q+G  +W++Ia++++ gR++k+c++rw++ 
   XP_004502570.1 16 RGHWRPAEDEKLRQLVEQYGAQNWNSIAEKLQ-GRSGKSCRLRWFNQ 61
                     899*****************************.***********996 PP
2Myb_DNA-binding56.37.3e-1868111146
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                      r ++T+eE+e+l+ a + +G++ W++Iar ++ gRt++ +k++w+ 
   XP_004502570.1  68 RRPFTEEEEERLLAARRIHGNK-WALIARLFP-GRTDNAVKNHWHV 111
                      679*******************.*********.***********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129419.7231162IPR017930Myb domain
SMARTSM007178.4E-151564IPR001005SANT/Myb domain
SuperFamilySSF466894.49E-2915109IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.2E-271769IPR009057Homeodomain-like
CDDcd001676.74E-141960No hitNo description
PfamPF139212.0E-171979No hitNo description
PROSITE profilePS5129426.61163117IPR017930Myb domain
SMARTSM007171.7E-1567115IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.8E-2070116IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 291 aa     Download sequence    Send to blast
MDDSSSAAED TKTCPRGHWR PAEDEKLRQL VEQYGAQNWN SIAEKLQGRS GKSCRLRWFN  60
QLDPRINRRP FTEEEEERLL AARRIHGNKW ALIARLFPGR TDNAVKNHWH VIMARKQREQ  120
SKLLCGKRSF QHLYNNNNID DHNTSQQQQN LLFSSRIGYD NGRFYDKDHR IVNNINIVDT  180
PSSSLASWNF ASVPTTLNSS KGSDRFLYRI CPNPTFSSLP NYKRVVTNPF GFFGSSDHDG  240
KIKKDLMTST LITNLRSSKE KEQDHHHEAN INEHKEEVPF IDFLGVGVSS S
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A1e-30161167107B-MYB
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_004502570.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004502570.10.0transcription factor MYB52-like
TrEMBLA0A1S2YBY50.0A0A1S2YBY5_CICAR; transcription factor MYB52-like
STRINGXP_004502570.10.0(Cicer arietinum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF23034243
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G17950.15e-59myb domain protein 52