PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_004502331.1

Organism

Cicer arietinum

Taxonomic ID

3827

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Cicereae; Cicer

Family

Trihelix

Protein Properties

Length: 382aa MW: 43824.3 Da PI: 6.0396

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_004502331.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	85.6	6.2e-27	71	153	2	86
trihelix 2 WtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 W ++e++ Li +rrem++ ++++k++k+lWe++s+kmre+gf rsp++C++kw+nl k++kk k+++++++ s +++ +++++ XP_004502331.1 71 WVQDETRSLIGLRREMDSLFNTSKSNKHLWEQISAKMREKGFDRSPTMCTDKWRNLLKEFKKAKHQDRGGS--GSAKMSCYKEID 153 ********************************************************************984..445788899887 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	5.0E-4	62	132	IPR009057	Homeodomain-like
PROSITE profile	PS50090	8.455	63	127	IPR017877	Myb-like domain
SMART	SM00717	0.0015	67	129	IPR001005	SANT/Myb domain
CDD	cd12203	1.69E-28	69	134	No hit	No description
Pfam	PF13837	4.1E-20	70	155	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005634	Cellular Component	nucleus
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0042802	Molecular Function	identical protein binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 382 aa Download sequence Send to blast
MYLSSEKPRP IDFYKEEARD MMMEVVTSSD LPPPPPPHHH QPQPQMILNA ESSGEDPEME 60 IKAPKKRAET WVQDETRSLI GLRREMDSLF NTSKSNKHLW EQISAKMREK GFDRSPTMCT 120 DKWRNLLKEF KKAKHQDRGG SGSAKMSCYK EIDEILRERN KCTQQYKSPT PTSKVESYMQ 180 FSDKGIDDAN ISFGPVEASG RPTLNLERGL DHDGHPLAIA ADAVAASGVP PWNWRETPGN 240 GGESQSCCGR VISVKWGDYT RRIGIDGTPE AIKEAIRAAF RLRTKRAFWL EDEEQIIRSI 300 DREMPIGNYT LHLDEGMAIK VCLYDESDHI PVHTEDKIFY TEDDYRDFLA RRAWTCLREF 360 DGYRNIDNMD DLRPGAIYRG VS

Sequence ? help Back to Top

Protein Sequence Length: 382 aa Download sequence Send to blast

MYLSSEKPRP IDFYKEEARD MMMEVVTSSD LPPPPPPHHH QPQPQMILNA ESSGEDPEME  60
IKAPKKRAET WVQDETRSLI GLRREMDSLF NTSKSNKHLW EQISAKMREK GFDRSPTMCT  120
DKWRNLLKEF KKAKHQDRGG SGSAKMSCYK EIDEILRERN KCTQQYKSPT PTSKVESYMQ  180
FSDKGIDDAN ISFGPVEASG RPTLNLERGL DHDGHPLAIA ADAVAASGVP PWNWRETPGN  240
GGESQSCCGR VISVKWGDYT RRIGIDGTPE AIKEAIRAAF RLRTKRAFWL EDEEQIIRSI  300
DREMPIGNYT LHLDEGMAIK VCLYDESDHI PVHTEDKIFY TEDDYRDFLA RRAWTCLREF  360
DGYRNIDNMD DLRPGAIYRG VS

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
2jmw_A	6e-47	65	151	1	86	DNA binding protein GT-1
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor that binds specifically to the core DNA sequence 5'-GGTTAA-3'. May act as a molecular switch in response to light signals. {ECO:0000269\|PubMed:10437822, ECO:0000269\|PubMed:15044016, ECO:0000269\|PubMed:7866025}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00004	PBM	Transfer from 920224	Download

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_004502331.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	BT136784	0.0	BT136784.1 Medicago truncatula clone JCVI-FLMt-18L18 unknown mRNA.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004502331.1	0.0	trihelix transcription factor GT-4
Swissprot	Q9FX53	0.0	TGT1_ARATH; Trihelix transcription factor GT-1
TrEMBL	A0A1S2YCH9	0.0	A0A1S2YCH9_CICAR; trihelix transcription factor GT-4
STRING	XP_004502331.1	0.0	(Cicer arietinum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF6817	32	48

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G13450.1	1e-180	Trihelix family protein

Publications ? help Back to Top
Le Gourrierec J,Li YF,Zhou DX Transcriptional activation by Arabidopsis GT-1 may be through interaction with TFIIA-TBP-TATA complex. Plant J., 1999. 18(6): p. 663-8 [PMID:10417717]