PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_004502034.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Cicereae; Cicer
Family HD-ZIP
Protein Properties Length: 246aa    MW: 28622.1 Da    PI: 4.8374
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_004502034.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox551.3e-1763110956
                     HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
        Homeobox   9 keqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                      +q+++Le+ Fe ++++  e++ +LA++lgL+ rqV++WFqNrRa+ k
  XP_004502034.1  63 FDQVKALEKSFELDNKLEPERKVKLAEELGLQPRQVSIWFQNRRARLK 110
                     58********************************************98 PP

2HD-ZIP_I/II122.81.6e-3956148193
     HD-ZIP_I/II   1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelke 93 
                     ekkrrl  +qvk+LE+sFe ++kLeperKv+la+eLglqprqv +WFqnrRAR ktkqlE+dy +Lk+++d lk e ++L++e+e+L+++++e
  XP_004502034.1  56 EKKRRLGFDQVKALEKSFELDNKLEPERKVKLAEELGLQPRQVSIWFQNRRARLKTKQLERDYGVLKSNFDVLKVEYSNLQQENEALTTKVRE 148
                     69**************************************************************************************99876 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5007116.66552112IPR001356Homeobox domain
SMARTSM003891.8E-1555116IPR001356Homeobox domain
CDDcd000862.89E-1557113No hitNo description
SuperFamilySSF466896.42E-1857123IPR009057Homeodomain-like
PfamPF000467.6E-1563110IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.601.3E-1864119IPR009057Homeodomain-like
PRINTSPR000314.6E-68392IPR000047Helix-turn-helix motif
PROSITE patternPS00027087110IPR017970Homeobox, conserved site
PRINTSPR000314.6E-692108IPR000047Helix-turn-helix motif
PfamPF021831.2E-15112153IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 246 aa     Download sequence    Send to blast
MKRFNNSNTM ASLLSIYPSK GVDERNETKG YSEEFQAMLD RLEQEDSYED ASLMLEKKRR  60
LGFDQVKALE KSFELDNKLE PERKVKLAEE LGLQPRQVSI WFQNRRARLK TKQLERDYGV  120
LKSNFDVLKV EYSNLQQENE ALTTKVRELK AKLLRDESNE TEKEESPISS GVVKEEISNV  180
DDSSLCFNGS YVPSTTSSMI NLVHYYDSRG SPEKIFQNHF MRMEEQNFFS VSELCNFFSV  240
DQSPTL
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1104112RRARLKTKQ
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that acts as a positive regulator of ABA-responsiveness, mediating the inhibitory effect of ABA on growth during seedling establishment. Binds to the DNA sequence 5'-CAATNATTG-3'. {ECO:0000269|PubMed:12678559}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_004502034.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Down-regulated by abscisic acid (ABA) and by salt stress. {ECO:0000269|PubMed:12678559, ECO:0000269|PubMed:16055682}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCU0248641e-126CU024864.5 M.truncatula DNA sequence from clone MTH2-9F11 on chromosome 3, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004502034.10.0homeobox-leucine zipper protein ATHB-6-like
SwissprotP466678e-51ATHB5_ARATH; Homeobox-leucine zipper protein ATHB-5
TrEMBLA0A1S2YCB41e-179A0A1S2YCB4_CICAR; homeobox-leucine zipper protein ATHB-6-like
STRINGXP_004502034.11e-180(Cicer arietinum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF18683489
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G65310.13e-53homeobox protein 5
Publications ? help Back to Top
  1. Cassan-Wang H, et al.
    Identification of novel transcription factors regulating secondary cell wall formation in Arabidopsis.
    Front Plant Sci, 2013. 4: p. 189
    [PMID:23781226]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Song L, et al.
    A transcription factor hierarchy defines an environmental stress response network.
    Science, 2017.
    [PMID:27811239]
  4. Stamm P, et al.
    The Transcription Factor ATHB5 Affects GA-Mediated Plasticity in Hypocotyl Cell Growth during Seed Germination.
    Plant Physiol., 2017. 173(1): p. 907-917
    [PMID:27872245]