 |
Plant Transcription
Factor Database
|
Transcription Factor Information
|
Basic
Information? help
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| TF ID |
XP_004501886.1 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Cicereae; Cicer
|
| Family |
LBD |
| Protein Properties |
Length: 198aa MW: 21119.7 Da PI: 7.2429 |
| Description |
LBD family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| XP_004501886.1 | genome | NCBI | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | DUF260 | 143.8 | 5.1e-45 | 10 | 108 | 1 | 99 |
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaela 95
+CaaCk+lrrkC ++C++apyfp e+p+kfanvhk+FGasnv+k+l++l +++reda++sl+yeAear+rdPvyG+vg i+ lq+q+++l++el+
XP_004501886.1 10 PCAACKFLRRKCMPGCIFAPYFPPEEPQKFANVHKIFGASNVTKILNELLPQQREDAVNSLAYEAEARVRDPVYGCVGAISFLQRQVQRLQKELD 104
7*********************************************************************************************9 PP
DUF260 96 llke 99
++++
XP_004501886.1 105 SANA 108
9876 PP
|
| Sequence ? help Back to Top |
| Protein Sequence Length: 198 aa
Download sequence Send
to blast |
MASSSSYNSP CAACKFLRRK CMPGCIFAPY FPPEEPQKFA NVHKIFGASN VTKILNELLP 60
QQREDAVNSL AYEAEARVRD PVYGCVGAIS FLQRQVQRLQ KELDSANADL LRFAYNDISP 120
SPLPPLPLVV PNSFHQQLIP QRGFTTARSF GNDGNAFYSF PYSIPWNDTS EDINGGVGGG 180
GGGSAGGVGG GVGGGGNL
|
| Functional Description ? help
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| Source |
Description |
| UniProt | Not known; ectopic expression of LOB leads to alterations in the size and shape of leaves and floral organs and causes male and female sterility. |
| Regulation -- Description ? help
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| Source |
Description |
| UniProt | INDUCTION: Positively regulated within the shoot apex by both ASYMMETRIC LEAVES 1 (AS1) and ASYMMETRIC LEAVES 2 (AS2/LBD6) and by KNAT1. {ECO:0000269|PubMed:11934861}. |
| Annotation --
Nucleotide ? help
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| Source |
Hit ID |
E-value |
Description |
| GenBank | AC140849 | 1e-116 | AC140849.8 Medicago truncatula clone mth2-17f20, complete sequence. |
| GenBank | AC147877 | 1e-116 | AC147877.10 Medicago truncatula clone mth2-9b13, complete sequence. |
| GenBank | CU234113 | 1e-116 | CU234113.3 M.truncatula DNA sequence from clone MTH2-16M17 on chromosome 3, complete sequence. |
| GenBank | JN412594 | 1e-116 | JN412594.2 Medicago truncatula LOB domain protein mRNA, complete cds. |
| GenBank | JQ653161 | 1e-116 | JQ653161.1 Medicago truncatula elongated petiolule 1 (ELP1) gene, complete cds. |
