PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Cicereae; Cicer

Family

GATA

Protein Properties

Length: 303aa MW: 33576.9 Da PI: 6.7299

Description

GATA family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_004501661.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GATA	54.4	1.8e-17	197	233	1	35
GATA 1 CsnCgttk..TplWRrgpdgnktLCnaCGlyyrkkgl 35 C++Cgt++ Tp++Rrgp+g++tLCnaCGl+++ +g+ XP_004501661.1 197 CTHCGTSSksTPMMRRGPSGPRTLCNACGLFWANRGT 233 *********************************9997 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00979	3.4E-10	62	97	IPR010399	Tify domain
PROSITE profile	PS51320	14.957	62	97	IPR010399	Tify domain
Pfam	PF06200	1.5E-12	66	96	IPR010399	Tify domain
PROSITE profile	PS51017	12.729	129	171	IPR010402	CCT domain
Pfam	PF06203	6.2E-15	129	171	IPR010402	CCT domain
PROSITE profile	PS50114	10.739	191	247	IPR000679	Zinc finger, GATA-type
SMART	SM00401	4.6E-15	191	244	IPR000679	Zinc finger, GATA-type
SuperFamily	SSF57716	6.18E-13	194	247	No hit	No description
Gene3D	G3DSA:3.30.50.10	2.3E-16	195	238	IPR013088	Zinc finger, NHR/GATA-type
CDD	cd00202	4.51E-15	196	238	No hit	No description
Pfam	PF00320	5.0E-15	197	233	IPR000679	Zinc finger, GATA-type
PROSITE pattern	PS00344	0	197	224	IPR000679	Zinc finger, GATA-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0005515	Molecular Function	protein binding
GO:0008270	Molecular Function	zinc ion binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 303 aa Download sequence Send to blast
MYNSMNMSDQ IKNNEDADNH IHYDSHTLED GSGEGEGPIH DVSLEDVYVS GDGNHADMSI 60 QRFDDSSQLT LSFRGQVYVF DSVTPEKVQS VLLLLGGCEL SSGSQCLDTS PLNQRSGTEF 120 PTRCSQPQRA ASLIRFRQKR KERNFDKKVR YGVRQEVALR MQRSKGQFTS SKKQDGANNW 180 GSDPESGQDV VQSETSCTHC GTSSKSTPMM RRGPSGPRTL CNACGLFWAN RGTLRDLSTS 240 KRHHEQHTLA APPEQGTLRD LSNSKRNHEL HTLASPKTVD EGNDLNCRTA LPAPNDTVDD 300 KTT

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional activator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. {ECO:0000250, ECO:0000269\|PubMed:14966217}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_004501661.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	BT138662	0.0	BT138662.1 Medicago truncatula clone JCVI-FLMt-15G4 unknown mRNA.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004501661.1	0.0	GATA transcription factor 25-like
Swissprot	Q9LRH6	6e-79	GAT25_ARATH; GATA transcription factor 25
TrEMBL	A0A1S2Y9V7	0.0	A0A1S2Y9V7_CICAR; GATA transcription factor 25-like
STRING	XP_004501661.1	0.0	(Cicer arietinum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF2836	33	68

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G24470.2	2e-73	GATA-type zinc finger protein with TIFY domain

Publications ? help Back to Top
Brand LH, et al. Screening for protein-DNA interactions by automatable DNA-protein interaction ELISA. PLoS ONE, 2013. 8(10): p. e75177 [PMID:24146751]