PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_004501619.1
Organism
Cicer arietinum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Cicereae; Cicer
Family ZF-HD
Protein Properties Length: 271aa    MW: 29977.1 Da    PI: 6.9799
Description ZF-HD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_004501619.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1ZF-HD_dimer97.21.3e-3064119359
     ZF-HD_dimer   3 kvrYkeClkNhAaslGghavDGCgEfmpsegeegtaaalkCaACgCHRnFHRrevee 59 
                     +vrY+eC+kNhA+++GghavDGC+Ef+++ geegt +a+ CaAC+CHRnFHR+e + 
  XP_004501619.1  64 TVRYRECQKNHAVNIGGHAVDGCCEFLAA-GEEGTLEAVICAACNCHRNFHRKEIDG 119
                     79**************************9.999********************9876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
ProDomPD1257744.0E-2055118IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PfamPF047705.4E-2865117IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
TIGRFAMsTIGR015662.9E-2666117IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PROSITE profilePS5152326.75167116IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
SuperFamilySSF466891.24E-19194269IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.604.8E-30196270IPR009057Homeodomain-like
TIGRFAMsTIGR015653.3E-23208264IPR006455Homeodomain, ZF-HD class
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009793Biological Processembryo development ending in seed dormancy
GO:0003677Molecular FunctionDNA binding
GO:0042803Molecular Functionprotein homodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 271 aa     Download sequence    Send to blast
MEFDEHQDQE EEEEEEEMGF PVTPVAGYDS LGNSGLRSKI GSVGHDGGSV TTASGGRKSG  60
PTGTVRYREC QKNHAVNIGG HAVDGCCEFL AAGEEGTLEA VICAACNCHR NFHRKEIDGE  120
LTSQSHNHQP RQHQHPQYHH HHQLSPYYHR AAQPPPPGYL HHHLVTPLLS QHRPLALPPT  180
ASGGGFSRED DDVSNPSSSG GGGGSGTKKR FRTKFTQEQK DRMLAFAEQI GWRIQKQDEA  240
AIEQFCVENC IKRNVLKVWM HNNKHTLGKK P
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wh7_A6e-252072661675ZF-HD homeobox family protein
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtPutative transcription factor. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_004501619.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004501619.10.0zinc-finger homeodomain protein 2-like
SwissprotQ6YXH52e-70ZHD1_ORYSJ; Zinc-finger homeodomain protein 1
TrEMBLA0A1S2YAX30.0A0A1S2YAX3_CICAR; zinc-finger homeodomain protein 2-like
STRINGXP_004501619.10.0(Cicer arietinum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF20634253
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G24660.14e-63homeobox protein 22
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]