PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Cicereae; Cicer

Family

HD-ZIP

Protein Properties

Length: 270aa MW: 30239.9 Da PI: 8.1417

Description

HD-ZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_004501488.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	58.8	8.9e-19	106	160	2	56
T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 rk+ ++tk+q + Lee F+ +++++ +e++eLA+kl+L +rqV vWFqNrRa+ k XP_004501488.1 106 RKKLRLTKQQSQLLEETFKDHSTLNPKEKQELARKLNLRTRQVEVWFQNRRARTK 160 78889************************************************98 PP
2	HD-ZIP_I/II	114.9	5e-37	106	194	1	89
HD-ZIP_I/II 1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLre 89 +kk+rl+k+q++lLEe+F+ +++L+p++K+elar+L+l++rqv+vWFqnrRARtk+k++E+d+e Lk++y++l+een+rLe+e ++L++ XP_004501488.1 106 RKKLRLTKQQSQLLEETFKDHSTLNPKEKQELARKLNLRTRQVEVWFQNRRARTKLKKTEMDCEELKKCYETLTEENKRLENELKDLKS 194 69*************************************************************************************94 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	2.8E-19	96	163	IPR009057	Homeodomain-like
PROSITE profile	PS50071	18.058	102	162	IPR001356	Homeobox domain
SuperFamily	SSF46689	6.42E-18	103	170	IPR009057	Homeodomain-like
SMART	SM00389	1.0E-15	104	166	IPR001356	Homeobox domain
CDD	cd00086	2.24E-17	106	163	No hit	No description
Pfam	PF00046	2.9E-16	106	160	IPR001356	Homeobox domain
PROSITE pattern	PS00027	0	137	160	IPR017970	Homeobox, conserved site
CDD	cd14686	0.00556	155	194	No hit	No description
Pfam	PF02183	4.1E-7	162	196	IPR003106	Leucine zipper, homeobox-associated
SMART	SM00340	3.2E-15	162	205	IPR003106	Leucine zipper, homeobox-associated

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 270 aa Download sequence Send to blast
MGFDISLGLG LGLHEQSHKK KDDDPFNKAN PIISLTLGVG GSPSHASSTC SLQLSSFSNS 60 STNISIKRER DSEELTHVPA AYVENNNINP SKVLVDDVDE NGNTNRKKLR LTKQQSQLLE 120 ETFKDHSTLN PKEKQELARK LNLRTRQVEV WFQNRRARTK LKKTEMDCEE LKKCYETLTE 180 ENKRLENELK DLKSMKTTDA PFNHMQLPVA GLTICPSCNR ICTGSGGDEN SNIGPSPTTT 240 LLLSPKPHIH FYTNNSNNYS FTQSFATIAS

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor. {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_004501488.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004501488.1	0.0	homeobox-leucine zipper protein HAT9-like
Swissprot	P46604	8e-55	HAT22_ARATH; Homeobox-leucine zipper protein HAT22
TrEMBL	A0A1S2Y9H7	0.0	A0A1S2Y9H7_CICAR; homeobox-leucine zipper protein HAT9-like
STRING	XP_004501488.1	0.0	(Cicer arietinum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF1144	33	107

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G37790.1	7e-56	HD-ZIP family protein

Publications ? help Back to Top
Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Liu T,Longhurst AD,Talavera-Rauh F,Hokin SA,Barton MK The Arabidopsis transcription factor ABIG1 relays ABA signaled growth inhibition and drought induced senescence. Elife, 2017. [PMID:27697148] Song L, et al. A transcription factor hierarchy defines an environmental stress response network. Science, 2017. [PMID:27811239]