PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_004501445.1
Organism
Cicer arietinum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Cicereae; Cicer
Family WRKY
Protein Properties Length: 162aa    MW: 18644.4 Da    PI: 4.7798
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_004501445.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY98.15.7e-31101159159
                     ---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
            WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                     ldDg++WrKYG+K+vk+s++pr+YYrC+  gC+vkk+ver+ +dp++v++tY g+H+h+
  XP_004501445.1 101 LDDGFKWRKYGKKMVKNSPNPRNYYRCSVDGCQVKKRVERDVNDPSYVITTYVGTHTHP 159
                     59********************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.806.4E-3388159IPR003657WRKY domain
SuperFamilySSF1182902.35E-2894159IPR003657WRKY domain
PROSITE profilePS5081128.62196161IPR003657WRKY domain
SMARTSM007741.2E-34101160IPR003657WRKY domain
PfamPF031061.2E-24102159IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009867Biological Processjasmonic acid mediated signaling pathway
GO:0050832Biological Processdefense response to fungus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 162 aa     Download sequence    Send to blast
MTDKNPRPPN SLDSNFTNQP LELPEYFKFD DDQWPDDEPE PFVFEHVVNQ ENQQANKFVG  60
DFGGSGSYLE GSSSNDVSSE REKKEVTDKV AFKTQSEVEI LDDGFKWRKY GKKMVKNSPN  120
PRNYYRCSVD GCQVKKRVER DVNDPSYVIT TYVGTHTHPG FC
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A4e-2491158774Probable WRKY transcription factor 4
2lex_A4e-2491158774Probable WRKY transcription factor 4
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00531DAPTransfer from AT5G26170Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_004501445.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCT9673162e-45CT967316.8 M.truncatula DNA sequence from clone MTH2-189G21 on chromosome 3, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004501445.21e-116probable WRKY transcription factor 50 isoform X1
SwissprotQ8VWQ51e-38WRK50_ARATH; Probable WRKY transcription factor 50
TrEMBLA0A1S2Y9A51e-114A0A1S2Y9A5_CICAR; probable WRKY transcription factor 50 isoform X1
STRINGXP_004501445.11e-117(Cicer arietinum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF112034110
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G26170.11e-40WRKY DNA-binding protein 50
Publications ? help Back to Top
  1. Brand LH,Kirchler T,Hummel S,Chaban C,Wanke D
    DPI-ELISA: a fast and versatile method to specify the binding of plant transcription factors to DNA in vitro.
    Plant Methods, 2010. 6: p. 25
    [PMID:21108821]